Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RLT86_RS03060 Genome accession   NZ_CP134601
Coordinates   650896..651306 (+) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain XH1022     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 645896..656306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT86_RS03045 (RLT86_03050) - 646885..649191 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RLT86_RS03050 (RLT86_03055) - 649236..650009 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  RLT86_RS03055 (RLT86_03060) mazG 650121..650927 (+) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  RLT86_RS03060 (RLT86_03065) comEA 650896..651306 (+) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  RLT86_RS03065 (RLT86_03070) pcnB 651431..652894 (+) 1464 WP_005129648.1 polynucleotide adenylyltransferase PcnB -
  RLT86_RS03070 (RLT86_03075) folK 652891..653373 (+) 483 WP_030423643.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RLT86_RS03075 (RLT86_03080) panB 653419..654228 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RLT86_RS03080 (RLT86_03085) panC 654232..655080 (+) 849 WP_109850697.1 pantoate--beta-alanine ligase -
  RLT86_RS03085 (RLT86_03090) rapZ 655103..655954 (+) 852 WP_000821671.1 RNase adapter RapZ -
  RLT86_RS03090 (RLT86_03095) - 655951..656220 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=882254 RLT86_RS03060 WP_002041921.1 650896..651306(+) (comEA) [Acinetobacter baumannii strain XH1022]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=882254 RLT86_RS03060 WP_002041921.1 650896..651306(+) (comEA) [Acinetobacter baumannii strain XH1022]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGACCAGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382