Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKS75_RS17085 Genome accession   NZ_CP134599
Coordinates   3519377..3520195 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH1015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3514377..3525195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKS75_RS17070 (RKS75_17075) pilE 3514594..3515019 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RKS75_RS17075 (RKS75_17080) pilY2 3515016..3515498 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  RKS75_RS17080 (RKS75_17085) pilY1 3515511..3519365 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  RKS75_RS17085 (RKS75_17090) pilX 3519377..3520195 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKS75_RS17090 (RKS75_17095) pilW 3520192..3521193 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  RKS75_RS17095 (RKS75_17100) pilV 3521194..3521754 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  RKS75_RS17100 (RKS75_17105) fimU 3521748..3522221 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKS75_RS17105 (RKS75_17110) ispH 3522391..3523341 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKS75_RS17110 (RKS75_17115) gmk 3523464..3524093 (+) 630 WP_000015937.1 guanylate kinase -
  RKS75_RS17115 (RKS75_17120) rpoZ 3524166..3524444 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKS75_RS17120 (RKS75_17125) - 3524483..3524612 (+) 130 Protein_3345 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=882227 RKS75_RS17085 WP_000149374.1 3519377..3520195(-) (pilX) [Acinetobacter baumannii strain XH1015]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=882227 RKS75_RS17085 WP_000149374.1 3519377..3520195(-) (pilX) [Acinetobacter baumannii strain XH1015]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993