Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RKS75_RS17075 Genome accession   NZ_CP134599
Coordinates   3515016..3515498 (-) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain XH1015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3510016..3520498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKS75_RS17040 (RKS75_17045) - 3510122..3511156 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  RKS75_RS17045 (RKS75_17050) - 3511271..3512212 (+) 942 WP_085916958.1 triacylglycerol lipase -
  RKS75_RS17050 (RKS75_17055) rplS 3512265..3512633 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKS75_RS17055 (RKS75_17060) trmD 3512842..3513582 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKS75_RS17060 (RKS75_17065) rimM 3513628..3514176 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  RKS75_RS17065 (RKS75_17070) rpsP 3514196..3514447 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKS75_RS17070 (RKS75_17075) pilE 3514594..3515019 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RKS75_RS17075 (RKS75_17080) pilY2 3515016..3515498 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  RKS75_RS17080 (RKS75_17085) pilY1 3515511..3519365 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  RKS75_RS17085 (RKS75_17090) pilX 3519377..3520195 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=882225 RKS75_RS17075 WP_001046420.1 3515016..3515498(-) (pilY2) [Acinetobacter baumannii strain XH1015]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=882225 RKS75_RS17075 WP_001046420.1 3515016..3515498(-) (pilY2) [Acinetobacter baumannii strain XH1015]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431