Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AACG32_RS05805 Genome accession   NZ_CP151009
Coordinates   1158039..1158668 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 19KM1776     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1153039..1163668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG32_RS05790 helD 1153281..1155335 (-) 2055 WP_000420538.1 DNA helicase IV -
  AACG32_RS05795 yccF 1155458..1155904 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AACG32_RS05800 yccS 1155914..1158076 (+) 2163 WP_000875041.1 YccS family putative transporter -
  AACG32_RS05805 sxy/tfoX 1158039..1158668 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AACG32_RS05810 sulA 1158887..1159396 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AACG32_RS05815 ompA 1159753..1160805 (+) 1053 WP_000750418.1 porin OmpA -
  AACG32_RS05820 matP 1160881..1161333 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AACG32_RS05825 ycbZ 1161519..1163279 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=882228 AACG32_RS05805 WP_000839153.1 1158039..1158668(-) (sxy/tfoX) [Escherichia coli strain 19KM1776]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=882228 AACG32_RS05805 WP_000839153.1 1158039..1158668(-) (sxy/tfoX) [Escherichia coli strain 19KM1776]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1