Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RKQ54_RS17890 Genome accession   NZ_CP134589
Coordinates   3658143..3658625 (-) Length   160 a.a.
NCBI ID   WP_001046423.1    Uniprot ID   A0A9E9MD39
Organism   Acinetobacter baumannii strain XH1024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3653143..3663625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ54_RS17855 (RKQ54_17870) - 3654008..3655227 (+) 1220 WP_087486619.1 IS3-like element ISAba19 family transposase -
  RKQ54_RS17860 - 3655269..3655340 (+) 72 Protein_3489 hypothetical protein -
  RKQ54_RS17865 (RKQ54_17875) rplS 3655393..3655761 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ54_RS17870 (RKQ54_17880) trmD 3655969..3656709 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ54_RS17875 (RKQ54_17885) rimM 3656755..3657303 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  RKQ54_RS17880 (RKQ54_17890) rpsP 3657323..3657574 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ54_RS17885 (RKQ54_17895) pilE 3657721..3658146 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  RKQ54_RS17890 (RKQ54_17900) pilY2 3658143..3658625 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  RKQ54_RS17895 (RKQ54_17905) pilY1 3658638..3662483 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ54_RS17900 (RKQ54_17910) pilX 3662495..3663313 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17575.84 Da        Isoelectric Point: 8.4834

>NTDB_id=881944 RKQ54_RS17890 WP_001046423.1 3658143..3658625(-) (pilY2) [Acinetobacter baumannii strain XH1024]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=881944 RKQ54_RS17890 WP_001046423.1 3658143..3658625(-) (pilY2) [Acinetobacter baumannii strain XH1024]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419