Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKQ54_RS17900 Genome accession   NZ_CP134589
Coordinates   3662495..3663313 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain XH1024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3657495..3668313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ54_RS17885 (RKQ54_17895) pilE 3657721..3658146 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  RKQ54_RS17890 (RKQ54_17900) pilY2 3658143..3658625 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  RKQ54_RS17895 (RKQ54_17905) pilY1 3658638..3662483 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ54_RS17900 (RKQ54_17910) pilX 3662495..3663313 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ54_RS17905 (RKQ54_17915) pilW 3663310..3664311 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  RKQ54_RS17910 (RKQ54_17920) pilV 3664312..3664872 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ54_RS17915 (RKQ54_17925) fimU 3664866..3665339 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ54_RS17920 (RKQ54_17930) ispH 3665509..3666459 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ54_RS17925 (RKQ54_17935) gmk 3666582..3667211 (+) 630 WP_000015937.1 guanylate kinase -
  RKQ54_RS17930 (RKQ54_17940) rpoZ 3667284..3667562 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ54_RS17935 (RKQ54_17945) - 3667601..3667731 (+) 131 Protein_3504 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=881946 RKQ54_RS17900 WP_000149376.1 3662495..3663313(-) (pilX) [Acinetobacter baumannii strain XH1024]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=881946 RKQ54_RS17900 WP_000149376.1 3662495..3663313(-) (pilX) [Acinetobacter baumannii strain XH1024]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989