Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RKQ55_RS01745 Genome accession   NZ_CP134586
Coordinates   379547..380029 (+) Length   160 a.a.
NCBI ID   WP_001046425.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374547..385029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS01735 (RKQ55_01740) pilX 374850..375668 (+) 819 WP_270900982.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ55_RS01740 (RKQ55_01745) pilY1 375680..379534 (+) 3855 WP_270900981.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ55_RS01745 (RKQ55_01750) pilY2 379547..380029 (+) 483 WP_001046425.1 type IV pilin protein Machinery gene
  RKQ55_RS01750 (RKQ55_01755) pilE 380026..380451 (+) 426 WP_125535023.1 type IV pilin protein Machinery gene
  RKQ55_RS01755 (RKQ55_01760) rpsP 380598..380849 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ55_RS01760 (RKQ55_01765) rimM 380869..381417 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RKQ55_RS01765 (RKQ55_01770) trmD 381463..382203 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ55_RS01770 (RKQ55_01775) rplS 382411..382779 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ55_RS01775 (RKQ55_01780) - 382831..383772 (-) 942 WP_085943440.1 triacylglycerol lipase -
  RKQ55_RS01780 (RKQ55_01785) - 383887..384918 (-) 1032 WP_270900980.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17563.78 Da        Isoelectric Point: 8.4834

>NTDB_id=881872 RKQ55_RS01745 WP_001046425.1 379547..380029(+) (pilY2) [Acinetobacter baumannii strain XH1026]
MNKYSILRFNQGVTLIELMVVVVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=881872 RKQ55_RS01745 WP_001046425.1 379547..380029(+) (pilY2) [Acinetobacter baumannii strain XH1026]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGGTTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACGACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.698

100

0.438