Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKQ55_RS01735 Genome accession   NZ_CP134586
Coordinates   374850..375668 (+) Length   272 a.a.
NCBI ID   WP_270900982.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369850..380668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS01700 (RKQ55_01705) - 370432..370562 (-) 131 Protein_326 hypothetical protein -
  RKQ55_RS01705 (RKQ55_01710) rpoZ 370601..370879 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ55_RS01710 (RKQ55_01715) gmk 370952..371581 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ55_RS01715 (RKQ55_01720) ispH 371704..372654 (+) 951 WP_000407066.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ55_RS01720 (RKQ55_01725) fimU 372824..373297 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ55_RS01725 (RKQ55_01730) pilV 373291..373851 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ55_RS01730 (RKQ55_01735) pilW 373852..374853 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  RKQ55_RS01735 (RKQ55_01740) pilX 374850..375668 (+) 819 WP_270900982.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ55_RS01740 (RKQ55_01745) pilY1 375680..379534 (+) 3855 WP_270900981.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ55_RS01745 (RKQ55_01750) pilY2 379547..380029 (+) 483 WP_001046425.1 type IV pilin protein Machinery gene
  RKQ55_RS01750 (RKQ55_01755) pilE 380026..380451 (+) 426 WP_125535023.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28788.61 Da        Isoelectric Point: 5.6905

>NTDB_id=881870 RKQ55_RS01735 WP_270900982.1 374850..375668(+) (pilX) [Acinetobacter baumannii strain XH1026]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVVGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLEALQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=881870 RKQ55_RS01735 WP_270900982.1 374850..375668(+) (pilX) [Acinetobacter baumannii strain XH1026]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTCGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGGTTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAGCTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989