Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RKQ55_RS01720 Genome accession   NZ_CP134586
Coordinates   372824..373297 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain XH1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367824..378297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS01695 (RKQ55_01700) - 368287..370392 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RKQ55_RS01700 (RKQ55_01705) - 370432..370562 (-) 131 Protein_326 hypothetical protein -
  RKQ55_RS01705 (RKQ55_01710) rpoZ 370601..370879 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ55_RS01710 (RKQ55_01715) gmk 370952..371581 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ55_RS01715 (RKQ55_01720) ispH 371704..372654 (+) 951 WP_000407066.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ55_RS01720 (RKQ55_01725) fimU 372824..373297 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ55_RS01725 (RKQ55_01730) pilV 373291..373851 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ55_RS01730 (RKQ55_01735) pilW 373852..374853 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  RKQ55_RS01735 (RKQ55_01740) pilX 374850..375668 (+) 819 WP_270900982.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=881867 RKQ55_RS01720 WP_001214065.1 372824..373297(+) (fimU) [Acinetobacter baumannii strain XH1026]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=881867 RKQ55_RS01720 WP_001214065.1 372824..373297(+) (fimU) [Acinetobacter baumannii strain XH1026]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1