Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RKQ56_RS16145 Genome accession   NZ_CP134583
Coordinates   3319420..3319830 (-) Length   136 a.a.
NCBI ID   WP_001978433.1    Uniprot ID   A0A0E1JQ57
Organism   Acinetobacter baumannii strain XH1032     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3314420..3324830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS16115 (RKQ56_16140) - 3314506..3314775 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RKQ56_RS16120 (RKQ56_16145) rapZ 3314772..3315623 (-) 852 WP_000821671.1 RNase adapter RapZ -
  RKQ56_RS16125 (RKQ56_16150) panC 3315646..3316494 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RKQ56_RS16130 (RKQ56_16155) panB 3316498..3317307 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RKQ56_RS16135 (RKQ56_16160) folK 3317353..3317835 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RKQ56_RS16140 (RKQ56_16165) pcnB 3317832..3319295 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  RKQ56_RS16145 (RKQ56_16170) comEA 3319420..3319830 (-) 411 WP_001978433.1 ComEA family DNA-binding protein Machinery gene
  RKQ56_RS16150 (RKQ56_16175) mazG 3319799..3320605 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  RKQ56_RS16155 (RKQ56_16180) - 3320717..3321490 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  RKQ56_RS16160 (RKQ56_16185) - 3321535..3323841 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15687.00 Da        Isoelectric Point: 10.4475

>NTDB_id=881843 RKQ56_RS16145 WP_001978433.1 3319420..3319830(-) (comEA) [Acinetobacter baumannii strain XH1032]
MQYSMRFWKNKYFLLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=881843 RKQ56_RS16145 WP_001978433.1 3319420..3319830(-) (comEA) [Acinetobacter baumannii strain XH1032]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1JQ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412