Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RKQ56_RS01435 Genome accession   NZ_CP134583
Coordinates   308679..309419 (+) Length   246 a.a.
NCBI ID   WP_002048088.1    Uniprot ID   A0A009QGI0
Organism   Acinetobacter baumannii strain XH1032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303679..314419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS01420 (RKQ56_01425) ponA 304266..306821 (-) 2556 WP_004839797.1 penicillin-binding protein PBP1a -
  RKQ56_RS01425 (RKQ56_01430) pilM 306983..308041 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ56_RS01430 (RKQ56_01435) pilN 308041..308682 (+) 642 WP_004839795.1 PilN domain-containing protein Machinery gene
  RKQ56_RS01435 (RKQ56_01440) pilO 308679..309419 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ56_RS01440 (RKQ56_01445) pilP 309430..309957 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ56_RS01445 (RKQ56_01450) pilQ 310020..312185 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ56_RS01450 (RKQ56_01455) aroK 312197..312766 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ56_RS01455 (RKQ56_01460) aroB 312795..313877 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27861.64 Da        Isoelectric Point: 4.7234

>NTDB_id=881817 RKQ56_RS01435 WP_002048088.1 308679..309419(+) (pilO) [Acinetobacter baumannii strain XH1032]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQMGNPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=881817 RKQ56_RS01435 WP_002048088.1 308679..309419(+) (pilO) [Acinetobacter baumannii strain XH1032]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCGCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACAGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAGATGGGCAACCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QGI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

98.78

100

0.988
  comO Acinetobacter baylyi ADP1

69.136

98.78

0.683