Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RKQ56_RS01430 Genome accession   NZ_CP134583
Coordinates   308041..308682 (+) Length   213 a.a.
NCBI ID   WP_004839795.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303041..313682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS01410 (RKQ56_01415) - 303089..303421 (+) 333 WP_000169602.1 hypothetical protein -
  RKQ56_RS01415 (RKQ56_01420) - 303424..304248 (+) 825 WP_004839798.1 putative RNA methyltransferase -
  RKQ56_RS01420 (RKQ56_01425) ponA 304266..306821 (-) 2556 WP_004839797.1 penicillin-binding protein PBP1a -
  RKQ56_RS01425 (RKQ56_01430) pilM 306983..308041 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ56_RS01430 (RKQ56_01435) pilN 308041..308682 (+) 642 WP_004839795.1 PilN domain-containing protein Machinery gene
  RKQ56_RS01435 (RKQ56_01440) pilO 308679..309419 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ56_RS01440 (RKQ56_01445) pilP 309430..309957 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ56_RS01445 (RKQ56_01450) pilQ 310020..312185 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ56_RS01450 (RKQ56_01455) aroK 312197..312766 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24035.35 Da        Isoelectric Point: 5.3968

>NTDB_id=881816 RKQ56_RS01430 WP_004839795.1 308041..308682(+) (pilN) [Acinetobacter baumannii strain XH1032]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKYSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=881816 RKQ56_RS01430 WP_004839795.1 308041..308682(+) (pilN) [Acinetobacter baumannii strain XH1032]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATATAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704