Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RKQ62_RS01630 Genome accession   NZ_CP134566
Coordinates   344930..345412 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339930..350412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS01620 (RKQ62_01630) - 340234..341051 (+) 818 Protein_310 PilX N-terminal domain-containing pilus assembly protein -
  RKQ62_RS01625 (RKQ62_01635) pilY1 341063..344917 (+) 3855 WP_000768951.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ62_RS01630 (RKQ62_01640) pilY2 344930..345412 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RKQ62_RS01635 (RKQ62_01645) pilE 345409..345834 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RKQ62_RS01640 (RKQ62_01650) rpsP 345981..346232 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ62_RS01645 (RKQ62_01655) rimM 346252..346800 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RKQ62_RS01650 (RKQ62_01660) trmD 346846..347586 (+) 741 WP_002057664.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ62_RS01655 (RKQ62_01665) rplS 347794..348162 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ62_RS01660 (RKQ62_01670) - 348215..349156 (-) 942 WP_085943440.1 triacylglycerol lipase -
  RKQ62_RS01665 (RKQ62_01675) - 349271..350302 (-) 1032 WP_002057662.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=881551 RKQ62_RS01630 WP_001046417.1 344930..345412(+) (pilY2) [Acinetobacter baumannii strain XH1038]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=881551 RKQ62_RS01630 WP_001046417.1 344930..345412(+) (pilY2) [Acinetobacter baumannii strain XH1038]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444