Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RKQ62_RS01635 Genome accession   NZ_CP134566
Coordinates   345409..345834 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain XH1038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340409..350834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS01625 (RKQ62_01635) pilY1 341063..344917 (+) 3855 WP_000768951.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ62_RS01630 (RKQ62_01640) pilY2 344930..345412 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RKQ62_RS01635 (RKQ62_01645) pilE 345409..345834 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RKQ62_RS01640 (RKQ62_01650) rpsP 345981..346232 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ62_RS01645 (RKQ62_01655) rimM 346252..346800 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RKQ62_RS01650 (RKQ62_01660) trmD 346846..347586 (+) 741 WP_002057664.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ62_RS01655 (RKQ62_01665) rplS 347794..348162 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ62_RS01660 (RKQ62_01670) - 348215..349156 (-) 942 WP_085943440.1 triacylglycerol lipase -
  RKQ62_RS01665 (RKQ62_01675) - 349271..350302 (-) 1032 WP_002057662.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=881552 RKQ62_RS01635 WP_000788342.1 345409..345834(+) (pilE) [Acinetobacter baumannii strain XH1038]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=881552 RKQ62_RS01635 WP_000788342.1 345409..345834(+) (pilE) [Acinetobacter baumannii strain XH1038]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518