Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RKQ62_RS01605 Genome accession   NZ_CP134566
Coordinates   338208..338681 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain XH1038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333208..343681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS01585 (RKQ62_01590) - 333672..335777 (-) 2106 WP_391485251.1 RelA/SpoT family protein -
  RKQ62_RS01590 (RKQ62_01600) rpoZ 335985..336263 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ62_RS01595 (RKQ62_01605) gmk 336336..336965 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ62_RS01600 (RKQ62_01610) ispH 337088..338038 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ62_RS01605 (RKQ62_01615) fimU 338208..338681 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ62_RS01610 (RKQ62_01620) pilV 338675..339235 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ62_RS01615 (RKQ62_01625) pilW 339236..340237 (+) 1002 WP_002057668.1 PilW family protein Machinery gene
  RKQ62_RS01620 (RKQ62_01630) - 340234..341051 (+) 818 Protein_310 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=881547 RKQ62_RS01605 WP_001214065.1 338208..338681(+) (fimU) [Acinetobacter baumannii strain XH1038]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=881547 RKQ62_RS01605 WP_001214065.1 338208..338681(+) (fimU) [Acinetobacter baumannii strain XH1038]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1