Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RKQ62_RS01610 Genome accession   NZ_CP134566
Coordinates   338675..339235 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333675..344235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS01590 (RKQ62_01600) rpoZ 335985..336263 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ62_RS01595 (RKQ62_01605) gmk 336336..336965 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ62_RS01600 (RKQ62_01610) ispH 337088..338038 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ62_RS01605 (RKQ62_01615) fimU 338208..338681 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ62_RS01610 (RKQ62_01620) pilV 338675..339235 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ62_RS01615 (RKQ62_01625) pilW 339236..340237 (+) 1002 WP_002057668.1 PilW family protein Machinery gene
  RKQ62_RS01620 (RKQ62_01630) - 340234..341051 (+) 818 Protein_310 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=881548 RKQ62_RS01610 WP_002194578.1 338675..339235(+) (pilV) [Acinetobacter baumannii strain XH1038]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=881548 RKQ62_RS01610 WP_002194578.1 338675..339235(+) (pilV) [Acinetobacter baumannii strain XH1038]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414