Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RKQ62_RS01615 Genome accession   NZ_CP134566
Coordinates   339236..340237 (+) Length   333 a.a.
NCBI ID   WP_002057668.1    Uniprot ID   N9LIC2
Organism   Acinetobacter baumannii strain XH1038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334236..345237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS01590 (RKQ62_01600) rpoZ 335985..336263 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ62_RS01595 (RKQ62_01605) gmk 336336..336965 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ62_RS01600 (RKQ62_01610) ispH 337088..338038 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ62_RS01605 (RKQ62_01615) fimU 338208..338681 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ62_RS01610 (RKQ62_01620) pilV 338675..339235 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ62_RS01615 (RKQ62_01625) pilW 339236..340237 (+) 1002 WP_002057668.1 PilW family protein Machinery gene
  RKQ62_RS01620 (RKQ62_01630) - 340234..341051 (+) 818 Protein_310 PilX N-terminal domain-containing pilus assembly protein -
  RKQ62_RS01625 (RKQ62_01635) pilY1 341063..344917 (+) 3855 WP_000768951.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35790.50 Da        Isoelectric Point: 6.1010

>NTDB_id=881549 RKQ62_RS01615 WP_002057668.1 339236..340237(+) (pilW) [Acinetobacter baumannii strain XH1038]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTVTNANNINFIPKVDTNTYIPEGLLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRVLSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=881549 RKQ62_RS01615 WP_002057668.1 339236..340237(+) (pilW) [Acinetobacter baumannii strain XH1038]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCGCAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGTAACAAATGCCAATAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGGATTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAGCTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACTCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAGTTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAAGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)

Type IV Pilus-assembly protein W (PilW)

(181-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LIC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988