Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RKQ63_RS17335 Genome accession   NZ_CP134565
Coordinates   3575423..3576283 (+) Length   286 a.a.
NCBI ID   WP_001152285.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1039     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3570423..3581283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ63_RS17310 (RKQ63_17325) - 3570437..3570724 (-) 288 WP_002075481.1 hypothetical protein -
  RKQ63_RS17315 (RKQ63_17330) - 3570728..3572215 (-) 1488 Protein_3383 DEAD/DEAH box helicase -
  RKQ63_RS17325 (RKQ63_17340) - 3573394..3574167 (+) 774 Protein_3385 ATPase, T2SS/T4P/T4SS family -
  RKQ63_RS17330 (RKQ63_17345) pilC 3574197..3575423 (+) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  RKQ63_RS17335 (RKQ63_17350) pilD 3575423..3576283 (+) 861 WP_001152285.1 A24 family peptidase Machinery gene
  RKQ63_RS17340 (RKQ63_17355) coaE 3576285..3576881 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  RKQ63_RS17345 (RKQ63_17360) - 3576878..3577792 (-) 915 WP_000075011.1 DMT family transporter -
  RKQ63_RS17350 (RKQ63_17365) rlmB 3577828..3578577 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RKQ63_RS17355 (RKQ63_17370) - 3578679..3579005 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  RKQ63_RS17360 (RKQ63_17375) - 3579082..3580392 (-) 1311 WP_000753294.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32153.54 Da        Isoelectric Point: 7.1042

>NTDB_id=881533 RKQ63_RS17335 WP_001152285.1 3575423..3576283(+) (pilD) [Acinetobacter baumannii strain XH1039]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=881533 RKQ63_RS17335 WP_001152285.1 3575423..3576283(+) (pilD) [Acinetobacter baumannii strain XH1039]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

52.941

95.105

0.503
  pilD Vibrio campbellii strain DS40M4

52.03

94.755

0.493
  pilD Neisseria gonorrhoeae MS11

48.485

92.308

0.448