Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RKQ65_RS18680 Genome accession   NZ_CP134562
Coordinates   3791622..3792362 (-) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii strain XH1041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3786622..3797362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ65_RS18660 (RKQ65_18710) aroB 3787164..3788246 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  RKQ65_RS18665 (RKQ65_18715) aroK 3788275..3788844 (-) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ65_RS18670 (RKQ65_18720) pilQ 3788856..3791021 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ65_RS18675 (RKQ65_18725) pilP 3791084..3791611 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ65_RS18680 (RKQ65_18730) pilO 3791622..3792362 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ65_RS18685 (RKQ65_18735) pilN 3792359..3793000 (-) 642 WP_020753500.1 PilN domain-containing protein Machinery gene
  RKQ65_RS18690 (RKQ65_18740) pilM 3793000..3794058 (-) 1059 WP_038346731.1 pilus assembly protein PilM Machinery gene
  RKQ65_RS18695 (RKQ65_18745) ponA 3794219..3796774 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=881446 RKQ65_RS18680 WP_000076099.1 3791622..3792362(-) (pilO) [Acinetobacter baumannii strain XH1041]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=881446 RKQ65_RS18680 WP_000076099.1 3791622..3792362(-) (pilO) [Acinetobacter baumannii strain XH1041]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683