Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RKQ65_RS18685 Genome accession   NZ_CP134562
Coordinates   3792359..3793000 (-) Length   213 a.a.
NCBI ID   WP_020753500.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3787359..3798000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ65_RS18665 (RKQ65_18715) aroK 3788275..3788844 (-) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ65_RS18670 (RKQ65_18720) pilQ 3788856..3791021 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ65_RS18675 (RKQ65_18725) pilP 3791084..3791611 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ65_RS18680 (RKQ65_18730) pilO 3791622..3792362 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ65_RS18685 (RKQ65_18735) pilN 3792359..3793000 (-) 642 WP_020753500.1 PilN domain-containing protein Machinery gene
  RKQ65_RS18690 (RKQ65_18740) pilM 3793000..3794058 (-) 1059 WP_038346731.1 pilus assembly protein PilM Machinery gene
  RKQ65_RS18695 (RKQ65_18745) ponA 3794219..3796774 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  RKQ65_RS18700 (RKQ65_18750) - 3796792..3797616 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  RKQ65_RS18705 (RKQ65_18755) - 3797619..3797951 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24022.41 Da        Isoelectric Point: 5.1310

>NTDB_id=881447 RKQ65_RS18685 WP_020753500.1 3792359..3793000(-) (pilN) [Acinetobacter baumannii strain XH1041]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLIDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPMVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=881447 RKQ65_RS18685 WP_020753500.1 3792359..3793000(-) (pilN) [Acinetobacter baumannii strain XH1041]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTATTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTATGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709