Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKQ68_RS01685 Genome accession   NZ_CP134555
Coordinates   359434..360252 (+) Length   272 a.a.
NCBI ID   WP_000149371.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354434..365252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ68_RS01650 (RKQ68_01660) - 355016..355146 (-) 131 Protein_316 hypothetical protein -
  RKQ68_RS01655 (RKQ68_01665) rpoZ 355185..355463 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ68_RS01660 (RKQ68_01670) gmk 355536..356165 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ68_RS01665 (RKQ68_01675) ispH 356288..357238 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ68_RS01670 (RKQ68_01680) fimU 357408..357881 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ68_RS01675 (RKQ68_01685) pilV 357875..358435 (+) 561 WP_153310066.1 type IV pilus modification protein PilV Machinery gene
  RKQ68_RS01680 (RKQ68_01690) pilW 358436..359437 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  RKQ68_RS01685 (RKQ68_01695) pilX 359434..360252 (+) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ68_RS01690 (RKQ68_01700) pilY1 360264..364118 (+) 3855 WP_025470147.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ68_RS01695 (RKQ68_01705) pilY2 364131..364613 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  RKQ68_RS01700 (RKQ68_01710) pilE 364610..365035 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28802.63 Da        Isoelectric Point: 5.6905

>NTDB_id=881273 RKQ68_RS01685 WP_000149371.1 359434..360252(+) (pilX) [Acinetobacter baumannii strain XH1044]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLEALQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=881273 RKQ68_RS01685 WP_000149371.1 359434..360252(+) (pilX) [Acinetobacter baumannii strain XH1044]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTAGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAGCTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993