Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RKQ68_RS01700 Genome accession   NZ_CP134555
Coordinates   364610..365035 (+) Length   141 a.a.
NCBI ID   WP_000788337.1    Uniprot ID   A0A009SG52
Organism   Acinetobacter baumannii strain XH1044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359610..370035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ68_RS01690 (RKQ68_01700) pilY1 360264..364118 (+) 3855 WP_025470147.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ68_RS01695 (RKQ68_01705) pilY2 364131..364613 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  RKQ68_RS01700 (RKQ68_01710) pilE 364610..365035 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  RKQ68_RS01705 (RKQ68_01715) rpsP 365182..365433 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ68_RS01710 (RKQ68_01720) rimM 365453..366001 (+) 549 WP_005134605.1 ribosome maturation factor RimM -
  RKQ68_RS01715 (RKQ68_01725) trmD 366047..366787 (+) 741 WP_005109350.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ68_RS01720 (RKQ68_01730) rplS 366995..367363 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ68_RS01725 (RKQ68_01735) - 367417..368358 (-) 942 WP_119310154.1 triacylglycerol lipase -
  RKQ68_RS01730 (RKQ68_01740) - 368473..369507 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15163.36 Da        Isoelectric Point: 7.8144

>NTDB_id=881276 RKQ68_RS01700 WP_000788337.1 364610..365035(+) (pilE) [Acinetobacter baumannii strain XH1044]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=881276 RKQ68_RS01700 WP_000788337.1 364610..365035(+) (pilE) [Acinetobacter baumannii strain XH1044]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACCTTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCAATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCCCTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.78

100

0.908
  comF Acinetobacter baylyi ADP1

50

99.291

0.496