Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RKQ68_RS01670 Genome accession   NZ_CP134555
Coordinates   357408..357881 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain XH1044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352408..362881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ68_RS01645 (RKQ68_01655) - 352871..354976 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RKQ68_RS01650 (RKQ68_01660) - 355016..355146 (-) 131 Protein_316 hypothetical protein -
  RKQ68_RS01655 (RKQ68_01665) rpoZ 355185..355463 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ68_RS01660 (RKQ68_01670) gmk 355536..356165 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ68_RS01665 (RKQ68_01675) ispH 356288..357238 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ68_RS01670 (RKQ68_01680) fimU 357408..357881 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ68_RS01675 (RKQ68_01685) pilV 357875..358435 (+) 561 WP_153310066.1 type IV pilus modification protein PilV Machinery gene
  RKQ68_RS01680 (RKQ68_01690) pilW 358436..359437 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  RKQ68_RS01685 (RKQ68_01695) pilX 359434..360252 (+) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=881270 RKQ68_RS01670 WP_001214065.1 357408..357881(+) (fimU) [Acinetobacter baumannii strain XH1044]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=881270 RKQ68_RS01670 WP_001214065.1 357408..357881(+) (fimU) [Acinetobacter baumannii strain XH1044]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1