Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RKQ73_RS17205 Genome accession   NZ_CP134548
Coordinates   3534914..3535396 (-) Length   160 a.a.
NCBI ID   WP_001046421.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529914..3540396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ73_RS17170 (RKQ73_17180) - 3530022..3531056 (+) 1035 WP_001189446.1 lipase secretion chaperone -
  RKQ73_RS17175 (RKQ73_17185) - 3531171..3532112 (+) 942 WP_085916958.1 triacylglycerol lipase -
  RKQ73_RS17180 (RKQ73_17190) rplS 3532164..3532532 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ73_RS17185 (RKQ73_17195) trmD 3532740..3533480 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ73_RS17190 (RKQ73_17200) rimM 3533526..3534074 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  RKQ73_RS17195 (RKQ73_17205) rpsP 3534094..3534345 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ73_RS17200 (RKQ73_17210) pilE 3534492..3534917 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  RKQ73_RS17205 (RKQ73_17215) pilY2 3534914..3535396 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  RKQ73_RS17210 (RKQ73_17220) pilY1 3535409..3539263 (-) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ73_RS17215 (RKQ73_17225) pilX 3539275..3540093 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17563.78 Da        Isoelectric Point: 8.4834

>NTDB_id=881061 RKQ73_RS17205 WP_001046421.1 3534914..3535396(-) (pilY2) [Acinetobacter baumannii strain XH1051]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=881061 RKQ73_RS17205 WP_001046421.1 3534914..3535396(-) (pilY2) [Acinetobacter baumannii strain XH1051]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419