Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKQ73_RS17215 Genome accession   NZ_CP134548
Coordinates   3539275..3540093 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH1051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3534275..3545093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ73_RS17200 (RKQ73_17210) pilE 3534492..3534917 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  RKQ73_RS17205 (RKQ73_17215) pilY2 3534914..3535396 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  RKQ73_RS17210 (RKQ73_17220) pilY1 3535409..3539263 (-) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ73_RS17215 (RKQ73_17225) pilX 3539275..3540093 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ73_RS17220 (RKQ73_17230) pilW 3540090..3541091 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  RKQ73_RS17225 (RKQ73_17235) pilV 3541092..3541652 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ73_RS17230 (RKQ73_17240) fimU 3541646..3542119 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ73_RS17235 (RKQ73_17245) ispH 3542289..3543239 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ73_RS17240 (RKQ73_17250) gmk 3543362..3543991 (+) 630 WP_000015936.1 guanylate kinase -
  RKQ73_RS17245 (RKQ73_17255) rpoZ 3544064..3544342 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ73_RS17250 (RKQ73_17260) - 3544381..3544511 (+) 131 Protein_3367 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=881063 RKQ73_RS17215 WP_000149374.1 3539275..3540093(-) (pilX) [Acinetobacter baumannii strain XH1051]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=881063 RKQ73_RS17215 WP_000149374.1 3539275..3540093(-) (pilX) [Acinetobacter baumannii strain XH1051]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993