Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   B0E36_RS24965 Genome accession   NZ_CP150879
Coordinates   5770393..5772555 (+) Length   720 a.a.
NCBI ID   WP_040896857.1    Uniprot ID   -
Organism   Streptomyces sp. MH191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5765393..5777555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0E36_RS24940 - 5765586..5766611 (-) 1026 WP_234526471.1 sugar kinase -
  B0E36_RS24945 - 5766619..5767542 (-) 924 WP_191852835.1 pseudouridine-5'-phosphate glycosidase -
  B0E36_RS24950 - 5767621..5768193 (-) 573 WP_234526469.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  B0E36_RS24955 - 5768253..5769125 (-) 873 WP_006143469.1 glycerophosphodiester phosphodiesterase family protein -
  B0E36_RS24960 - 5769440..5770309 (+) 870 WP_191852833.1 MHYT domain-containing protein -
  B0E36_RS24965 uvrB 5770393..5772555 (+) 2163 WP_040896857.1 excinuclease ABC subunit UvrB Machinery gene
  B0E36_RS24970 - 5772754..5773332 (+) 579 WP_006143466.1 TerD family protein -
  B0E36_RS24975 - 5773412..5775361 (+) 1950 WP_234552040.1 TerD family protein -
  B0E36_RS24980 - 5775653..5776666 (+) 1014 WP_234526465.1 TerC family protein -

Sequence

Protein


Download         Length: 720 a.a.        Molecular weight: 81016.72 Da        Isoelectric Point: 4.8595

>NTDB_id=880985 B0E36_RS24965 WP_040896857.1 5770393..5772555(+) (uvrB) [Streptomyces sp. MH191]
MRPVSTIERTVAPFEVVSPYRPSGDQPTAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVPLRVGDEIDRDQLLRRFVDIQYTRNDMAFARGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDEQLYVFPASHYIAGPERMERAINGIEKELEERLAELDRQGKLLESQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDDRGPGTAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGTYELSRGDGHVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFVELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMERAIDETNRRREKQIAYNTAHGIDPQPLRKKINDIVAQIAREDVDTEQLLGTGYRKGKDGKGARTPVPALAN
HQVPGGPEAPAGKGRAAKGKSAETVPTDRPAAALAEQIEEMTTRMRAAAADLQFEIAARLRDEVSEMKKELRQMREAGLA

Nucleotide


Download         Length: 2163 bp        

>NTDB_id=880985 B0E36_RS24965 WP_040896857.1 5770393..5772555(+) (uvrB) [Streptomyces sp. MH191]
ATGCGGCCCGTTTCCACGATCGAACGTACGGTGGCGCCCTTCGAGGTCGTCAGTCCCTATCGGCCCAGCGGCGACCAGCC
CACGGCCATCGCCGAGCTCGAGCGGCGCATTCGCGCCGGTGAGAAGGACGTCGTCCTGCTGGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTGCAGCGGCCCACTTTGGTGATGGCGCCGAACAAGACCCTCGCGGCC
CAGCTCGCCAACGAGTTCCGCGAGCTGCTCCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCCACCAACTCCCTGCTCACCCGCCGTGACGTCATCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTGGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTGCGGGTCGGCGACGAGATCGACCGCGACCAGCTCCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACATGGCCTTCGCCCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTCGCCGTCCGGATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACCCTCCACCCGCTCACCGGC
GAGATCATCAGCGACGACGAGCAGCTCTACGTCTTCCCCGCCTCCCACTACATTGCCGGCCCCGAGCGCATGGAGCGGGC
GATCAACGGCATCGAGAAGGAGCTGGAGGAGCGCCTGGCGGAGCTGGACAGGCAGGGCAAGCTGCTCGAGTCCCAGCGCC
TGCGCATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGACCGCGGGCCCGGCACGGCGCCGAACACGCTCCTCGACTACTTCCCCGAGGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGACCGTCTATCTG
TCGGCGACCCCGGGCACCTACGAGCTGTCCCGCGGCGACGGGCACGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACCCGCACCGAGAAGGACG
AGCGGGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCGTCGAGCTCGGCATCCAGGTG
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGTGTCGAACTGCTGCGCGAACTGCGGGCCGGCGAGTACGACGTGTT
GGTCGGCATCAACCTCCTGCGCGAGGGCCTGGACCTGCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCGGGGACCTCCCTCATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCCGGTCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAACGGGCCATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCCTACAACAC
GGCACACGGCATCGACCCCCAGCCGCTGCGCAAGAAGATCAACGACATCGTGGCCCAGATCGCCCGCGAGGACGTCGACA
CCGAGCAGCTCCTGGGGACGGGCTACCGCAAGGGCAAGGACGGCAAGGGGGCCAGGACGCCGGTTCCCGCGCTGGCCAAC
CACCAGGTCCCGGGCGGCCCGGAGGCCCCGGCCGGCAAGGGCAGGGCCGCCAAGGGCAAGTCGGCCGAGACGGTCCCCAC
CGACCGGCCGGCCGCCGCACTGGCGGAGCAGATCGAGGAGATGACCACGCGGATGCGGGCGGCGGCGGCCGACCTGCAGT
TCGAGATCGCGGCCCGGCTGCGCGACGAGGTCTCCGAGATGAAGAAGGAACTGCGGCAGATGAGGGAGGCCGGCCTGGCC
TGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(676-709)

Type III restriction enzyme, res subunit (ResIII)

(25-145)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

63.238

82.361

0.521
  uvrB Streptococcus pneumoniae R6

63.238

82.361

0.521
  uvrB Streptococcus pneumoniae D39

63.238

82.361

0.521