Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   WMY90_RS04900 Genome accession   NZ_CP150875
Coordinates   962844..964835 (-) Length   663 a.a.
NCBI ID   WP_002953358.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957844..969835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS04875 (WMY90_04875) - 958185..958979 (-) 795 WP_022097025.1 ABC transporter substrate-binding protein -
  WMY90_RS04880 (WMY90_04880) - 959041..960150 (-) 1110 WP_022097024.1 aminotransferase -
  WMY90_RS04885 (WMY90_04885) - 960497..961294 (-) 798 WP_022097023.1 transporter substrate-binding domain-containing protein -
  WMY90_RS04890 (WMY90_04890) - 961291..962121 (-) 831 WP_022097022.1 transporter substrate-binding domain-containing protein -
  WMY90_RS04895 (WMY90_04895) - 962335..962799 (-) 465 WP_011681454.1 8-oxo-dGTP diphosphatase -
  WMY90_RS04900 (WMY90_04900) uvrB 962844..964835 (-) 1992 WP_002953358.1 excinuclease ABC subunit UvrB Machinery gene
  WMY90_RS04905 (WMY90_04905) - 964982..965449 (-) 468 WP_022097021.1 hypothetical protein -
  WMY90_RS04910 (WMY90_04910) - 965522..966458 (-) 937 Protein_964 type II CAAX endopeptidase family protein -
  WMY90_RS04915 (WMY90_04915) - 966657..968867 (+) 2211 WP_173940613.1 ABC transporter substrate-binding protein/permease -
  WMY90_RS04920 (WMY90_04920) - 968867..969607 (+) 741 WP_002945131.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76099.16 Da        Isoelectric Point: 4.5966

>NTDB_id=880864 WMY90_RS04900 WP_002953358.1 962844..964835(-) (uvrB) [Streptococcus thermophilus strain TCI125]
MIDRKEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGIENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSDGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEVAEDTVNYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=880864 WMY90_RS04900 WP_002953358.1 962844..964835(-) (uvrB) [Streptococcus thermophilus strain TCI125]
ATGATAGATAGAAAAGAAGACAACCAATTTCATTTGGTTTCTAAATACGAACCCTCAGGAGATCAGCCCCAGGCTATCGA
AACCTTGGTTGATAATATCAAAGGTGGGGAGAAGGCTCAAATTTTAAAGGGTGCGACAGGGACAGGTAAGACCTATACCA
TGAGTCAAGTCATCCAACGTGTTAATAAGCCAACTCTGGTTATCGCCCACAATAAGACCTTGGCAGGCCAGCTCTATGGT
GAGTTCAAGGAGTTTTTCCCAGACAATGCTGTAGAGTATTTTGTTTCCTATTATGATTATTACCAGCCAGAGGCTTATGT
GCCTTCATCAGATACCTATATTGAAAAAGATAGCTCTATTAATGATGAAATTGATAAACTCCGTCACTCAGCGACATCAG
CCCTATTGGAACGCAATGATGTAATTGTTGTGGCTTCCGTGTCTTGTATTTACGGTTTGGGTTCGCCAAAAGAATATGCG
GATTCAGCTGTTAGCCTGCGTCCTGGTCAAGAAATTTCTCGGGACAAGTTGCTCAATGACTTGGTTGATATCCAGTTTGA
GCGTAACGATATTGATTTTCAACGCGGAAAATTCCGTGTACGTGGCGATGTGGTTGAAATTTTCCCTGCCAGCCGTGATG
AAAATGCTTTTCGAGTGGAATTTTTCGGTGATGAGATTGACCGTATCTGTGAAATTGAAAGTTTGACAGGACGTAATCTC
GGTGAAGTTGAGCACCTTGTTCTTTTTCCGGCTACTCACTTTATGACCAATGAAGAGCATATGGAAGAAGCTATCAAGAA
TATTATGGAAGAGATGGAGGTTCAGGTTAATCAATTTGAAGCCGAGGGTAAACTCATCGAGGCTCAACGTATTCGTCAAC
GGACAGAATACGATGTCGAAATGCTTCGTGAGATGGGGTACACCAATGGTATCGAAAACTACTCACGTCACATGGATGGT
CGTAAAGAAGGTGAGCCACCGTTTACTCTACTTGATTTCTTCCCAGAAGATTTCCTCATCATGATTGATGAAAGTCACAT
GACCATGGGACAGATTAAAGGAATGTATAACGGAGACCAAGCCCGTAAGAAGATGCTTGTCGATTACGGCTTCCGTTTAC
CATCGGCTCTTGATAACCGTCCCCTTCGTCGTGAAGAATTCGAAAGTCATGTGCATCAGATTGTCTATGTGTCAGCGACA
CCAGGTGACTATGAGATGGAGCAGACTGAGACTGTCGTTGAGCAAATCATCCGTCCGACAGGACTTCTTGATCCAGAAGT
CGAAGTTCGTCCAACTATGGGTCAAATGGATGACCTCCTTGGTGAAATCAATGCCCGTACTGAAAAAGGAGAGCGTGTCT
TTGTAACAACTTTGACTAAGAAGATGGCTGAAGACTTGACCGATTACCTCAAGGAAATGGGAGTCAAGGTCAAATACATG
CACTCTGATATTAAGACTTTGGAGCGTACTGAGATTATCCGTGACTTGCGTTTGGGTGTCTTTGATGTTCTTATTGGGAT
TAACCTTCTTCGTGAGGGTATTGATGTTCCTGAAGTTAGTCTGGTTGCTATTTTGGATGCTGATAAGGAAGGTTTCCTTC
GTAATGAACGTGGGCTTATCCAAACGATTGGACGCGCTGCCCGAAATAGTGATGGGCACGTTATCATGTATGCGGATAAG
ATTACGGAGTCTATGCAGAAAGCTATGGATGAAACTGCTCGTCGTCGTGAAATCCAAATGGCCTATAATAAGGAGCACGG
TATCACTCCGCAAACGATTAAGAAAGAAATTCGTGACCTTATTTCGATTACCAAGACCAATGAAGCAGAAGTGGCAGAGG
ATACTGTGAACTACAGTGCCATGAACAAGAAAGAACGCCAAGAAGCCATCAAGAAACTTCAAAAGCAAATGCACGAAGCG
GCAGAGCTGCTTGATTTTGAATTGGCAGCCCAAATTCGTGATATGGTTCTAGAGCTGAAGAGTATGGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-660)

Ultra-violet resistance protein B (UvrB)

(556-598)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.219

100

0.852
  uvrB Streptococcus pneumoniae D39

85.219

100

0.852
  uvrB Streptococcus pneumoniae TIGR4

85.068

100

0.851