Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RLO20_RS01800 Genome accession   NZ_CP134538
Coordinates   348632..349120 (+) Length   162 a.a.
NCBI ID   WP_012679031.1    Uniprot ID   C0MB80
Organism   Streptococcus equi subsp. equi strain XJ5012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 349724..351066 348632..349120 flank 604


Gene organization within MGE regions


Location: 348632..351066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLO20_RS01800 (RLO20_01800) ssbA 348632..349120 (+) 489 WP_012679031.1 single-stranded DNA-binding protein Machinery gene
  RLO20_RS01805 (RLO20_01805) rpsR 349279..349518 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  RLO20_RS01810 (RLO20_01810) - 349724..351066 (+) 1343 WP_173292356.1 IS3 family transposase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17750.59 Da        Isoelectric Point: 5.1951

>NTDB_id=880839 RLO20_RS01800 WP_012679031.1 348632..349120(+) (ssbA) [Streptococcus equi subsp. equi strain XJ5012]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDGSPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=880839 RLO20_RS01800 WP_012679031.1 348632..349120(+) (ssbA) [Streptococcus equi subsp. equi strain XJ5012]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGGAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0MB80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377