Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RI196_RS12595 | Genome accession | NZ_CP134501 |
| Coordinates | 2588701..2589768 (-) | Length | 355 a.a. |
| NCBI ID | WP_066247583.1 | Uniprot ID | - |
| Organism | Aeribacillus composti strain HB-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2583701..2594768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RI196_RS12555 (RI196_12555) | - | 2584645..2585442 (+) | 798 | WP_063388101.1 | YqhG family protein | - |
| RI196_RS12560 (RI196_12560) | - | 2585533..2585712 (-) | 180 | WP_063388100.1 | YqzE family protein | - |
| RI196_RS12565 (RI196_12565) | comGG | 2585832..2586203 (-) | 372 | WP_066247591.1 | competence type IV pilus minor pilin ComGG | - |
| RI196_RS12570 (RI196_12570) | comGF | 2586200..2586691 (-) | 492 | WP_133309105.1 | competence type IV pilus minor pilin ComGF | - |
| RI196_RS12575 (RI196_12575) | - | 2586621..2586947 (-) | 327 | WP_063388097.1 | hypothetical protein | - |
| RI196_RS12580 (RI196_12580) | comGD | 2586931..2587392 (-) | 462 | WP_158640149.1 | competence type IV pilus minor pilin ComGD | - |
| RI196_RS12585 (RI196_12585) | comGC | 2587361..2587672 (-) | 312 | WP_063388095.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RI196_RS12590 (RI196_12590) | comGB | 2587677..2588708 (-) | 1032 | WP_066247584.1 | competence type IV pilus assembly protein ComGB | - |
| RI196_RS12595 (RI196_12595) | comGA | 2588701..2589768 (-) | 1068 | WP_066247583.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RI196_RS12600 (RI196_12600) | - | 2590085..2590330 (+) | 246 | WP_063388092.1 | DUF2626 domain-containing protein | - |
| RI196_RS12605 (RI196_12605) | - | 2590385..2591029 (-) | 645 | WP_066247578.1 | MBL fold metallo-hydrolase | - |
| RI196_RS12610 (RI196_12610) | - | 2591275..2591448 (+) | 174 | WP_065095533.1 | DUF2759 domain-containing protein | - |
| RI196_RS12615 (RI196_12615) | - | 2591565..2592683 (-) | 1119 | WP_311066317.1 | hypothetical protein | - |
| RI196_RS12620 (RI196_12620) | - | 2592753..2593874 (-) | 1122 | WP_311066318.1 | M14 family metallocarboxypeptidase | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 40503.35 Da Isoelectric Point: 8.6397
>NTDB_id=880626 RI196_RS12595 WP_066247583.1 2588701..2589768(-) (comGA) [Aeribacillus composti strain HB-1]
MIEIEKLSEKLIELACSFSASDIHIVPKKKKAVIQFRIDDDIKEIFHLPKAICERLISHFKFMAQMDIGEKRRPQNGAYS
FHTIYGEVHLRLSTLPTVFDESLVIRILLEQSIQSPEKLSLFPSESKKMLSFLKHSHGLLILTGPTGSGKTTTLYSLLHY
AKKHFKRNIITLEDPVETKSDEMLQVQINEKAGITYANGLKAILRHDPDVIMVGEIRDHETARIAVRAGLSGHLVLTTMH
TRDAKGAIYRLLEFGVTFSEIEQTLIAVAAQRLVHLICPFCKGNCPPYCKKLKEIRRIGVYELLYGKNLTAAIREAKGEE
QSELDYMKLKDVIKKGIALGYLYPDIYDRWVFEYE
MIEIEKLSEKLIELACSFSASDIHIVPKKKKAVIQFRIDDDIKEIFHLPKAICERLISHFKFMAQMDIGEKRRPQNGAYS
FHTIYGEVHLRLSTLPTVFDESLVIRILLEQSIQSPEKLSLFPSESKKMLSFLKHSHGLLILTGPTGSGKTTTLYSLLHY
AKKHFKRNIITLEDPVETKSDEMLQVQINEKAGITYANGLKAILRHDPDVIMVGEIRDHETARIAVRAGLSGHLVLTTMH
TRDAKGAIYRLLEFGVTFSEIEQTLIAVAAQRLVHLICPFCKGNCPPYCKKLKEIRRIGVYELLYGKNLTAAIREAKGEE
QSELDYMKLKDVIKKGIALGYLYPDIYDRWVFEYE
Nucleotide
Download Length: 1068 bp
>NTDB_id=880626 RI196_RS12595 WP_066247583.1 2588701..2589768(-) (comGA) [Aeribacillus composti strain HB-1]
ATGATTGAAATTGAAAAGCTTAGCGAAAAACTGATTGAACTGGCGTGTTCATTTAGTGCCTCAGACATCCATATTGTTCC
GAAAAAGAAAAAAGCAGTTATTCAATTTCGAATTGACGATGACATCAAAGAAATATTTCATCTGCCTAAAGCTATTTGTG
AACGCTTAATTTCTCATTTTAAATTTATGGCCCAAATGGATATTGGCGAAAAAAGGCGTCCGCAAAACGGTGCTTACTCC
TTCCATACGATTTACGGAGAGGTGCATCTTCGTTTATCGACATTGCCTACAGTATTCGATGAAAGTCTAGTCATCCGAAT
ATTGCTAGAGCAATCGATTCAATCGCCTGAAAAACTTTCATTGTTCCCGTCAGAATCCAAAAAAATGCTTTCATTTTTAA
AGCATTCTCACGGTCTCCTGATCCTTACCGGTCCGACCGGTTCGGGAAAAACGACCACTCTTTATTCGCTTCTCCATTAT
GCAAAAAAACATTTTAAAAGAAACATCATCACACTTGAAGATCCTGTGGAAACGAAAAGCGATGAAATGCTTCAAGTGCA
GATCAATGAAAAAGCTGGAATTACGTATGCAAATGGGTTAAAAGCAATATTAAGACACGATCCCGATGTCATTATGGTCG
GTGAAATTCGGGATCATGAGACAGCAAGGATTGCGGTCCGGGCTGGGCTTAGCGGACATTTAGTACTGACCACCATGCAT
ACGCGGGATGCAAAGGGAGCTATTTATCGATTATTAGAATTTGGTGTAACCTTTTCCGAAATTGAGCAAACTTTGATCGC
TGTTGCTGCGCAGCGTCTCGTTCATTTAATATGCCCGTTTTGCAAAGGGAATTGCCCGCCTTATTGCAAAAAATTAAAGG
AAATTAGGAGAATTGGGGTCTATGAACTTCTTTACGGCAAAAATTTAACCGCCGCTATTCGGGAAGCAAAAGGAGAGGAG
CAGAGTGAGTTAGATTATATGAAGTTAAAAGATGTAATTAAAAAAGGAATCGCTCTTGGGTATTTATATCCGGACATATA
TGATCGTTGGGTGTTTGAATATGAATAG
ATGATTGAAATTGAAAAGCTTAGCGAAAAACTGATTGAACTGGCGTGTTCATTTAGTGCCTCAGACATCCATATTGTTCC
GAAAAAGAAAAAAGCAGTTATTCAATTTCGAATTGACGATGACATCAAAGAAATATTTCATCTGCCTAAAGCTATTTGTG
AACGCTTAATTTCTCATTTTAAATTTATGGCCCAAATGGATATTGGCGAAAAAAGGCGTCCGCAAAACGGTGCTTACTCC
TTCCATACGATTTACGGAGAGGTGCATCTTCGTTTATCGACATTGCCTACAGTATTCGATGAAAGTCTAGTCATCCGAAT
ATTGCTAGAGCAATCGATTCAATCGCCTGAAAAACTTTCATTGTTCCCGTCAGAATCCAAAAAAATGCTTTCATTTTTAA
AGCATTCTCACGGTCTCCTGATCCTTACCGGTCCGACCGGTTCGGGAAAAACGACCACTCTTTATTCGCTTCTCCATTAT
GCAAAAAAACATTTTAAAAGAAACATCATCACACTTGAAGATCCTGTGGAAACGAAAAGCGATGAAATGCTTCAAGTGCA
GATCAATGAAAAAGCTGGAATTACGTATGCAAATGGGTTAAAAGCAATATTAAGACACGATCCCGATGTCATTATGGTCG
GTGAAATTCGGGATCATGAGACAGCAAGGATTGCGGTCCGGGCTGGGCTTAGCGGACATTTAGTACTGACCACCATGCAT
ACGCGGGATGCAAAGGGAGCTATTTATCGATTATTAGAATTTGGTGTAACCTTTTCCGAAATTGAGCAAACTTTGATCGC
TGTTGCTGCGCAGCGTCTCGTTCATTTAATATGCCCGTTTTGCAAAGGGAATTGCCCGCCTTATTGCAAAAAATTAAAGG
AAATTAGGAGAATTGGGGTCTATGAACTTCTTTACGGCAAAAATTTAACCGCCGCTATTCGGGAAGCAAAAGGAGAGGAG
CAGAGTGAGTTAGATTATATGAAGTTAAAAGATGTAATTAAAAAAGGAATCGCTCTTGGGTATTTATATCCGGACATATA
TGATCGTTGGGTGTTTGAATATGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
62.606 |
99.437 |
0.623 |
| pilB | Glaesserella parasuis strain SC1401 |
39.706 |
95.775 |
0.38 |
| pilF | Thermus thermophilus HB27 |
42.809 |
84.225 |
0.361 |