Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   RI196_RS12585 Genome accession   NZ_CP134501
Coordinates   2587361..2587672 (-) Length   103 a.a.
NCBI ID   WP_063388095.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2582361..2592672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS12550 (RI196_12550) - 2582926..2584593 (+) 1668 WP_311066316.1 SNF2-related protein -
  RI196_RS12555 (RI196_12555) - 2584645..2585442 (+) 798 WP_063388101.1 YqhG family protein -
  RI196_RS12560 (RI196_12560) - 2585533..2585712 (-) 180 WP_063388100.1 YqzE family protein -
  RI196_RS12565 (RI196_12565) comGG 2585832..2586203 (-) 372 WP_066247591.1 competence type IV pilus minor pilin ComGG -
  RI196_RS12570 (RI196_12570) comGF 2586200..2586691 (-) 492 WP_133309105.1 competence type IV pilus minor pilin ComGF -
  RI196_RS12575 (RI196_12575) - 2586621..2586947 (-) 327 WP_063388097.1 hypothetical protein -
  RI196_RS12580 (RI196_12580) comGD 2586931..2587392 (-) 462 WP_158640149.1 competence type IV pilus minor pilin ComGD -
  RI196_RS12585 (RI196_12585) comGC 2587361..2587672 (-) 312 WP_063388095.1 competence type IV pilus major pilin ComGC Machinery gene
  RI196_RS12590 (RI196_12590) comGB 2587677..2588708 (-) 1032 WP_066247584.1 competence type IV pilus assembly protein ComGB -
  RI196_RS12595 (RI196_12595) comGA 2588701..2589768 (-) 1068 WP_066247583.1 competence type IV pilus ATPase ComGA Machinery gene
  RI196_RS12600 (RI196_12600) - 2590085..2590330 (+) 246 WP_063388092.1 DUF2626 domain-containing protein -
  RI196_RS12605 (RI196_12605) - 2590385..2591029 (-) 645 WP_066247578.1 MBL fold metallo-hydrolase -
  RI196_RS12610 (RI196_12610) - 2591275..2591448 (+) 174 WP_065095533.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11361.25 Da        Isoelectric Point: 5.0078

>NTDB_id=880625 RI196_RS12585 WP_063388095.1 2587361..2587672(-) (comGC) [Aeribacillus composti strain HB-1]
MKIVKNEHGFTLVEMLVVLLVISILLIITIPNVMAHNKNIQNKGCEGLIDMVQGQVVAYEMEFHQTPTINDLITKGYLPN
NSGKCPNGDEIEIDANGNVIKSN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=880625 RI196_RS12585 WP_063388095.1 2587361..2587672(-) (comGC) [Aeribacillus composti strain HB-1]
ATGAAAATAGTGAAAAATGAACATGGATTTACATTGGTGGAAATGCTGGTTGTACTGTTAGTGATCTCGATTTTGCTTAT
TATAACGATTCCGAATGTTATGGCTCATAATAAAAATATTCAAAATAAAGGGTGCGAAGGTTTAATTGATATGGTGCAGG
GGCAAGTCGTCGCATATGAAATGGAGTTTCATCAAACACCAACAATTAATGATTTAATCACTAAAGGGTACTTGCCGAAT
AATTCTGGAAAATGTCCAAATGGTGATGAGATTGAAATTGATGCAAATGGAAACGTCATTAAGAGCAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

57.471

84.466

0.485
  comGC Staphylococcus aureus MW2

39.604

98.058

0.388
  comGC Staphylococcus aureus N315

39.604

98.058

0.388