Detailed information NTG0880578

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RHP75_RS17500
• Genome accession: NZ_CP134499
• Coordinates: 3679383..3680252 (+)
• Length: 289 a.a.
• NCBI ID: WP_311089312.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SG20056
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3674383..3685252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHP75_RS17485 (RHP75_17485)	-	3675815..3676234 (-)	420	WP_311089309.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
RHP75_RS17490 (RHP75_17490)	pilB	3676455..3678158 (+)	1704	WP_311089310.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RHP75_RS17495 (RHP75_17495)	pilC	3678162..3679379 (+)	1218	WP_311089311.1	type II secretion system F family protein	Machinery gene
RHP75_RS17500 (RHP75_17500)	pilD	3679383..3680252 (+)	870	WP_311089312.1	A24 family peptidase	Machinery gene
RHP75_RS17505 (RHP75_17505)	coaE	3680407..3681021 (+)	615	WP_311089313.1	dephospho-CoA kinase	-
RHP75_RS17510 (RHP75_17510)	yacG	3681018..3681218 (+)	201	WP_305589768.1	DNA gyrase inhibitor YacG	-
RHP75_RS17515 (RHP75_17515)	-	3681222..3681437 (-)	216	WP_311089314.1	hypothetical protein	-
RHP75_RS17520 (RHP75_17520)	-	3681542..3682150 (-)	609	WP_311089315.1	energy-coupling factor ABC transporter permease	-
RHP75_RS17525 (RHP75_17525)	-	3682283..3682912 (+)	630	WP_160013159.1	DUF1780 domain-containing protein	-
RHP75_RS17530 (RHP75_17530)	-	3682909..3683403 (+)	495	WP_311089316.1	MOSC domain-containing protein	-
RHP75_RS17535 (RHP75_17535)	-	3683485..3683658 (+)	174	WP_311089317.1	DUF3094 family protein	-
RHP75_RS17540 (RHP75_17540)	-	3683722..3685023 (+)	1302	WP_311089318.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32067.14 Da
• Isoelectric Point: 6.3206

>NTDB_id=880578 RHP75_RS17500 WP_311089312.1 3679383..3680252(+) (pilD) [Pseudomonas sp. SG20056]
MSVIDFLASHMLAFVLCVLIIGLLVGSFLNVVVYRLPKMMQRDWREQAREILELPTEPQTATFNLVLPNSSCPHCAHEIK
PWENIPVISYLFLRGKCSSCKTPISMRYPLVELACGLLSAFTAWHFGFTWQAGAMLLLTWGLLAMSLIDVDHQLLPDSLV
LPLLWLGLIANSFGLFTSLEDALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLIMLRLRNAETSTPIPFGPYLAIAGWIALLWGEQITSSYLQIAGF

Nucleotide

• Length: 870 bp

>NTDB_id=880578 RHP75_RS17500 WP_311089312.1 3679383..3680252(+) (pilD) [Pseudomonas sp. SG20056]
ATGTCAGTAATCGACTTCTTGGCCAGCCACATGCTGGCCTTTGTTTTATGCGTACTAATAATTGGCCTGCTGGTCGGCAG
CTTCCTTAACGTGGTGGTTTATAGACTGCCAAAAATGATGCAACGCGACTGGCGCGAGCAGGCCCGTGAAATATTGGAGC
TGCCCACCGAGCCCCAGACAGCAACATTCAATCTGGTATTGCCCAACTCAAGCTGCCCACACTGCGCCCATGAAATAAAG
CCGTGGGAAAATATTCCGGTTATCAGCTACCTGTTTCTGCGGGGCAAATGTTCAAGCTGTAAAACGCCGATTAGCATGCG
TTATCCACTGGTTGAACTAGCTTGTGGCTTGTTGTCAGCTTTTACCGCTTGGCACTTCGGCTTTACTTGGCAGGCGGGAG
CGATGTTGCTGCTGACCTGGGGCCTGCTGGCTATGAGCCTGATCGATGTTGATCATCAACTGCTGCCGGACTCACTGGTA
TTGCCACTGCTGTGGCTTGGCTTGATTGCCAATAGTTTTGGCTTGTTTACCAGCCTGGAGGACGCCCTCTGGGGCGCGAT
TGCTGGCTATCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTAACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTACTGGCGATGCTCGGTGCCTGGGGGGGCTGGCAGATCTTGCCGTTGACGATATTGCTGTCGTCATTGGTTGGC
GCGGTACTTGGATTGATCATGCTGCGTTTGCGTAACGCGGAAACCAGCACGCCTATCCCCTTTGGTCCTTACCTGGCGAT
TGCCGGCTGGATTGCCTTGCTTTGGGGTGAGCAAATCACGTCCAGCTATCTTCAGATCGCCGGTTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	55.678	94.464	0.526
pilD	Vibrio cholerae strain A1552	55.678	94.464	0.526
pilD	Acinetobacter baumannii D1279779	51.93	98.616	0.512
pilD	Acinetobacter nosocomialis M2	51.228	98.616	0.505
pilD	Neisseria gonorrhoeae MS11	50.192	90.311	0.453