Detailed information NTG0880571

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: RHP75_RS13290
• Genome accession: NZ_CP134499
• Coordinates: 2778732..2780957 (-)
• Length: 741 a.a.
• NCBI ID: WP_311088590.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SG20056
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2773732..2785957

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHP75_RS13255 (RHP75_13255)	murB	2774080..2775114 (-)	1035	WP_311088584.1	UDP-N-acetylmuramate dehydrogenase	-
RHP75_RS13260 (RHP75_13260)	-	2775111..2775575 (-)	465	WP_311088585.1	low molecular weight protein-tyrosine-phosphatase	-
RHP75_RS13265 (RHP75_13265)	kdsB	2775575..2776339 (-)	765	WP_311088586.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RHP75_RS13270 (RHP75_13270)	-	2776340..2776525 (-)	186	WP_090387286.1	Trm112 family protein	-
RHP75_RS13275 (RHP75_13275)	lpxK	2776587..2777588 (-)	1002	WP_311088587.1	tetraacyldisaccharide 4'-kinase	-
RHP75_RS13280 (RHP75_13280)	-	2777602..2778030 (-)	429	WP_311088588.1	biopolymer transporter ExbD	-
RHP75_RS13285 (RHP75_13285)	exbB	2778027..2778659 (-)	633	WP_311088589.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
RHP75_RS13290 (RHP75_13290)	comA	2778732..2780957 (-)	2226	WP_311088590.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
RHP75_RS13295 (RHP75_13295)	-	2781092..2781625 (+)	534	WP_311088591.1	DUF2062 domain-containing protein	-
RHP75_RS13300 (RHP75_13300)	-	2781677..2782921 (-)	1245	WP_311088592.1	lipoprotein-releasing ABC transporter permease subunit	-
RHP75_RS13305 (RHP75_13305)	lolD	2782921..2783604 (-)	684	WP_170049072.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
RHP75_RS13310 (RHP75_13310)	-	2783627..2784892 (-)	1266	WP_311088593.1	lipoprotein-releasing ABC transporter permease subunit	-
RHP75_RS13315 (RHP75_13315)	-	2784987..2785568 (+)	582	WP_311088594.1	PilZ domain-containing protein	-
RHP75_RS13320 (RHP75_13320)	-	2785581..2785883 (+)	303	WP_311088595.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80629.70 Da
• Isoelectric Point: 9.1268

>NTDB_id=880571 RHP75_RS13290 WP_311088590.1 2778732..2780957(-) (comA) [Pseudomonas sp. SG20056]
MRTGILALVAGLLVLRFLPALPPQWLLAVLPLAGLMLLPFRSYPIALFLFGFSWACGSAQWALDDRLARQLDARTLWLQG
QVVGLPEVGEGVVRFQLEQVASRRDKLPARLRLAWYDGPVVRAGETWRLAVRLKRPHGLVNPQAFDYEAWLLAQRIGATG
TVKSGELIATASGSGAWRDRLRQQLLATPAHGREGALAALVLGDDSGLSTADWQVLQSTGTVHLMVISGQHIGLLAALLY
GLVAGLARLGLWPRDWPWLPCACALAFAGALAYGLLAGFEVPVQRACVMVGLVLLWRWRFRHLGVWLPLLVALLAVLLSE
PLASLQPGFWLSFGAVMLLILIFSGRLGAWPWWSTLLRAQWAMAIGLLPLLLALGLPVSASGPLANLVAVPVVGLLVVPL
ALLGTLLLPLPGVGIALLWMAGLMLDLLFELLTQLALWLPAWLPSALPFWAWLLVALGALVLLLPAALPMRSLGALLLLP
LLFSPQQRPEYGRAEVWMLDVGQGLAVLVRTQGHDLLYDAGPRFGEFDTGERVVLPSLRALDVRGLDLLLISHADSDHAG
GAAAIQRGLPVRQVLSGEADKLAPSLQAQACVSGQHWLWDGVQFSTWRWDGASDGNQASCVLRIEANGERLWLTGDIDSQ
AERALLNSGLVMPAEWLLAPHHGSRSSSSAAFLEKVRPTAALVSRGAHNAFGHPHYEVVERYRVSDARLYDTAEHGAVRI
RLGAFEPAQGLRYRARFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=880571 RHP75_RS13290 WP_311088590.1 2778732..2780957(-) (comA) [Pseudomonas sp. SG20056]
ATGCGCACAGGGATTTTGGCGCTGGTGGCTGGGTTATTGGTGCTGCGCTTCCTTCCGGCGTTGCCGCCGCAATGGCTGCT
GGCTGTTCTGCCGTTAGCCGGTTTGATGCTGCTGCCGTTTCGCAGTTATCCCATCGCCTTGTTTCTGTTTGGGTTCAGCT
GGGCCTGCGGATCGGCGCAGTGGGCGCTGGATGATCGTCTGGCGCGGCAGCTGGATGCGCGTACCTTGTGGCTGCAAGGG
CAGGTGGTCGGTTTGCCCGAGGTGGGTGAAGGCGTGGTGCGCTTTCAGCTGGAGCAGGTGGCCTCCCGTCGTGACAAATT
GCCCGCGCGTTTGCGTCTGGCCTGGTACGACGGACCGGTAGTGCGCGCGGGTGAGACCTGGCGTCTGGCGGTACGGCTCA
AGCGCCCCCATGGTCTAGTTAATCCTCAAGCATTCGATTACGAAGCCTGGCTGTTGGCGCAGCGTATCGGCGCCACGGGT
ACGGTGAAAAGTGGTGAACTGATTGCTACTGCCAGTGGTTCCGGGGCCTGGCGCGACCGCTTGCGTCAGCAGCTTTTGGC
AACGCCCGCACATGGCCGCGAAGGCGCGTTGGCGGCTCTGGTGCTGGGAGATGACTCGGGGCTGTCGACGGCGGATTGGC
AGGTGCTGCAGAGCACCGGCACGGTGCACCTGATGGTGATCTCCGGTCAGCATATCGGTCTGTTGGCGGCGCTTTTATAT
GGCCTGGTTGCTGGCTTGGCGCGTCTGGGGCTTTGGCCGCGCGACTGGCCCTGGCTGCCCTGCGCCTGTGCATTAGCCTT
TGCTGGTGCGTTGGCCTACGGCCTGCTGGCAGGTTTTGAGGTGCCAGTGCAGCGCGCCTGCGTGATGGTCGGTCTGGTGT
TGCTCTGGCGCTGGCGCTTTCGTCATCTGGGTGTGTGGTTGCCCCTGCTCGTGGCATTGCTTGCGGTGTTACTGAGTGAG
CCGCTGGCCAGTTTGCAGCCAGGGTTCTGGTTGTCCTTTGGCGCGGTAATGCTGTTGATCCTGATCTTCAGTGGTCGGCT
GGGCGCCTGGCCTTGGTGGAGCACCTTGCTGCGCGCGCAATGGGCCATGGCCATCGGCTTGTTGCCGCTGCTGCTGGCCC
TCGGTTTACCGGTGAGTGCCAGCGGCCCTTTGGCCAACCTGGTGGCGGTTCCCGTAGTTGGGTTATTGGTCGTGCCGCTT
GCATTGCTCGGCACGTTATTGCTGCCCTTGCCTGGGGTGGGTATTGCGCTGCTCTGGATGGCAGGCTTGATGCTGGACCT
GCTGTTCGAGTTATTGACGCAATTGGCCCTGTGGCTGCCGGCCTGGTTGCCCAGCGCCTTGCCATTCTGGGCCTGGCTGC
TGGTGGCGCTGGGTGCGTTGGTTTTGCTCCTGCCAGCCGCTTTGCCGATGCGTAGCCTGGGTGCGTTATTACTGCTGCCC
TTGTTATTCAGCCCGCAGCAGCGCCCGGAATACGGGCGGGCCGAGGTGTGGATGCTGGATGTCGGTCAGGGCCTGGCGGT
GCTGGTCAGAACCCAGGGGCATGACCTGCTGTATGACGCCGGGCCGCGCTTTGGTGAGTTCGATACGGGCGAGCGGGTGG
TGCTGCCATCGTTGCGCGCATTGGATGTGCGTGGGCTTGATCTGCTGCTGATCAGCCATGCTGATAGCGATCATGCCGGT
GGCGCCGCAGCGATCCAGCGCGGTCTGCCGGTCAGGCAGGTGCTCAGTGGCGAAGCGGATAAGCTCGCGCCTTCACTGCA
GGCCCAAGCTTGCGTCAGTGGTCAGCACTGGCTGTGGGATGGCGTGCAATTCAGTACCTGGCGCTGGGATGGTGCGAGCG
ATGGCAACCAGGCGTCCTGCGTGCTGCGTATCGAGGCCAATGGTGAGCGGCTGTGGCTGACCGGTGACATCGATAGCCAA
GCCGAGCGAGCACTGCTCAACAGCGGCCTGGTCATGCCGGCAGAGTGGTTGCTGGCGCCACACCATGGCAGTCGCAGTTC
ATCTTCGGCGGCTTTTCTTGAAAAGGTTAGACCTACAGCCGCGCTGGTTTCCCGTGGCGCGCACAATGCCTTTGGCCATC
CGCATTACGAAGTTGTCGAGCGTTACCGGGTATCGGATGCGCGACTGTACGACACAGCCGAACACGGGGCGGTACGGATT
CGTTTAGGCGCATTCGAGCCTGCGCAGGGTTTGCGCTATCGAGCACGTTTTTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (200-465)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	68.061	96.761	0.659
comA	Ralstonia pseudosolanacearum GMI1000	35.434	100	0.402