Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RHP75_RS13285 Genome accession   NZ_CP134499
Coordinates   2778027..2778659 (-) Length   210 a.a.
NCBI ID   WP_311088589.1    Uniprot ID   -
Organism   Pseudomonas sp. SG20056     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2773027..2783659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP75_RS13255 (RHP75_13255) murB 2774080..2775114 (-) 1035 WP_311088584.1 UDP-N-acetylmuramate dehydrogenase -
  RHP75_RS13260 (RHP75_13260) - 2775111..2775575 (-) 465 WP_311088585.1 low molecular weight protein-tyrosine-phosphatase -
  RHP75_RS13265 (RHP75_13265) kdsB 2775575..2776339 (-) 765 WP_311088586.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHP75_RS13270 (RHP75_13270) - 2776340..2776525 (-) 186 WP_090387286.1 Trm112 family protein -
  RHP75_RS13275 (RHP75_13275) lpxK 2776587..2777588 (-) 1002 WP_311088587.1 tetraacyldisaccharide 4'-kinase -
  RHP75_RS13280 (RHP75_13280) - 2777602..2778030 (-) 429 WP_311088588.1 biopolymer transporter ExbD -
  RHP75_RS13285 (RHP75_13285) exbB 2778027..2778659 (-) 633 WP_311088589.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHP75_RS13290 (RHP75_13290) comA 2778732..2780957 (-) 2226 WP_311088590.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHP75_RS13295 (RHP75_13295) - 2781092..2781625 (+) 534 WP_311088591.1 DUF2062 domain-containing protein -
  RHP75_RS13300 (RHP75_13300) - 2781677..2782921 (-) 1245 WP_311088592.1 lipoprotein-releasing ABC transporter permease subunit -
  RHP75_RS13305 (RHP75_13305) lolD 2782921..2783604 (-) 684 WP_170049072.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22881.12 Da        Isoelectric Point: 9.1188

>NTDB_id=880570 RHP75_RS13285 WP_311088589.1 2778027..2778659(-) (exbB) [Pseudomonas sp. SG20056]
MWELVKAGGWMMLPIILCSIAAAGIIAERLWTLRPSRITPPNLLGQVWKWIKEKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANASLLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIRLVEVVQGDRDVDMGEDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=880570 RHP75_RS13285 WP_311088589.1 2778027..2778659(-) (exbB) [Pseudomonas sp. SG20056]
GTGTGGGAACTGGTTAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTGTGTTCTATCGCTGCGGCCGGCATCATTGC
CGAACGCCTGTGGACGCTGCGGCCGAGCCGCATCACCCCACCCAACCTGCTCGGTCAGGTGTGGAAGTGGATCAAAGAGA
AAAAACTCAATAACCAGAAGCTCAAGGAGCTGCGCGCCAACTCGCCGTTGGGGCAGATCCTCGCCGCTGGCTTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCCAGGAAGCTGCCGCCCGTGTGATCCACGACCTGGAACGCTACCT
GAATGCCCTGGGCACTATCGCCGGTATCGCGCCGCTGCTGGGTTTGCTCGGTACAGTGCTGGGCATGATCGAAATCTTCA
GCTCCTTTATGGGGTCGGGCATGGCCAATGCGTCCTTGCTCGCCGGCGGTATTTCCAAGGCGCTGATCACTACGGCGGCG
GGTTTGATGGTGGCTATTCCGGCACTGTTCTTCCACCGTTACCTGCAACGCCGCGTCGACGAATTGGTGGTCGGCATGGA
GCAGGAGGCGATTCGCCTTGTGGAAGTGGTGCAGGGCGACCGTGATGTCGACATGGGCGAGGACAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90

100

0.9