Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RHP74_RS26705 Genome accession   NZ_CP134498
Coordinates   5807012..5808352 (+) Length   446 a.a.
NCBI ID   WP_010467552.1    Uniprot ID   A0A024EFS0
Organism   Pseudomonas sp. SG20052     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5802012..5813352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP74_RS26680 (RHP74_26680) pgeF 5802231..5802950 (-) 720 WP_077749385.1 peptidoglycan editing factor PgeF -
  RHP74_RS26685 (RHP74_26685) rluD 5802947..5803909 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHP74_RS26690 (RHP74_26690) - 5804061..5805083 (+) 1023 WP_311096687.1 outer membrane protein assembly factor BamD -
  RHP74_RS26695 (RHP74_26695) - 5805197..5805430 (+) 234 WP_010467554.1 PP0621 family protein -
  RHP74_RS26700 (RHP74_26700) pilS 5805420..5807009 (+) 1590 WP_311096688.1 ATP-binding protein Regulator
  RHP74_RS26705 (RHP74_26705) pilR 5807012..5808352 (+) 1341 WP_010467552.1 sigma-54 dependent transcriptional regulator Regulator
  RHP74_RS26710 (RHP74_26710) thiO 5808482..5809582 (-) 1101 WP_311096689.1 glycine oxidase ThiO -
  RHP74_RS26715 (RHP74_26715) - 5809641..5810042 (-) 402 WP_083375726.1 type IV pilin protein -
  RHP74_RS26720 (RHP74_26720) - 5810057..5813167 (-) 3111 WP_311096690.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49813.28 Da        Isoelectric Point: 6.4102

>NTDB_id=880548 RHP74_RS26705 WP_010467552.1 5807012..5808352(+) (pilR) [Pseudomonas sp. SG20052]
MSPRPKVLIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLMRETFDLCLTDMRLPDGTGLELVQYIQQRYPHVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTAIDRRLLGDSLPMRNLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQQEMVVDVRILCATHKDLDAEVTAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASH
VLKRLAAGSGQPAAKLHPLALDALKSYRFPGNVRELENVLERAYTLCEDKQIEASDLRLAEGNCTAESGVPDLTQIDNLE
DYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=880548 RHP74_RS26705 WP_010467552.1 5807012..5808352(+) (pilR) [Pseudomonas sp. SG20052]
ATGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTACTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTACAGTGCCCGCAACCTTGGCGAAGCCCAGGCCTTGTTGATGCGCGAGACATTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGCCTTGAGTTGGTGCAGTACATCCAGCAACGTTACCCACACGTGCCGGTGGCG
ATGATCACCGCTTACGGCAGCCTCGAAACAGCGATCAACGCCCTCAAGGCAGGGGCTTTCGACTTCCTGACCAAGCCGGT
TGACCTGACGCGCCTGCGCGAACTGGTCACCAGCGCCCTGCGCTTGCCGGCACCGGGTGGCGCCAGTACCGCCATCGATC
GCCGGTTGCTGGGCGATTCACTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTCGCACGCAGTCAGGCCCCGGTG
TACATCAGCGGCGAATCCGGCAGTGGCAAGGAATTGGTCGCCCGACTGATCCACGAGCAGGGCCCGCGGGCTAATCAACC
GTTCGTCCCGGTCAATTGCGGGGCAATTCCGTCAGAGTTGATGGAGAGTGAATTCTTCGGCCATCGCAAAGGCAGTTTCA
GCGGCGCCATCGAAGACAAACCAGGGCTGTTCCAGGCCGCCCACGGCGGCACACTGTTTCTCGACGAAGTGGCCGATCTG
CCCTTGGCGATGCAGGTCAAACTGCTCCGAGCCATTCAGGAGAAAGCCATTCGCAGTGTCGGCGGTCAGCAAGAAATGGT
GGTTGATGTCCGCATCCTTTGTGCCACCCACAAAGACCTCGATGCCGAAGTCACCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATCGAACTGCGCGTCCCCCCTTTGCGCGAGCGCCGCGACGACATCGAACCGCTGGCCAGCCAT
GTGCTCAAGCGCCTGGCGGCCGGCAGCGGTCAACCCGCCGCAAAACTCCATCCACTCGCCCTGGATGCGCTGAAAAGTTA
CCGTTTTCCGGGCAACGTACGGGAGCTGGAGAACGTGCTGGAGCGGGCTTACACCCTGTGCGAGGACAAACAGATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGTAACTGCACGGCAGAGAGCGGCGTGCCGGACCTGACGCAAATCGACAACCTGGAA
GATTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCACTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTTTCATTCAGATCGATGCGATATCGGCTCAAGAAATTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024EFS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.458

99.327

0.789
  pilR Acinetobacter baumannii strain A118

49.46

100

0.513