Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RHP74_RS26700 Genome accession   NZ_CP134498
Coordinates   5805420..5807009 (+) Length   529 a.a.
NCBI ID   WP_311096688.1    Uniprot ID   -
Organism   Pseudomonas sp. SG20052     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5800420..5812009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP74_RS26680 (RHP74_26680) pgeF 5802231..5802950 (-) 720 WP_077749385.1 peptidoglycan editing factor PgeF -
  RHP74_RS26685 (RHP74_26685) rluD 5802947..5803909 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHP74_RS26690 (RHP74_26690) - 5804061..5805083 (+) 1023 WP_311096687.1 outer membrane protein assembly factor BamD -
  RHP74_RS26695 (RHP74_26695) - 5805197..5805430 (+) 234 WP_010467554.1 PP0621 family protein -
  RHP74_RS26700 (RHP74_26700) pilS 5805420..5807009 (+) 1590 WP_311096688.1 ATP-binding protein Regulator
  RHP74_RS26705 (RHP74_26705) pilR 5807012..5808352 (+) 1341 WP_010467552.1 sigma-54 dependent transcriptional regulator Regulator
  RHP74_RS26710 (RHP74_26710) thiO 5808482..5809582 (-) 1101 WP_311096689.1 glycine oxidase ThiO -
  RHP74_RS26715 (RHP74_26715) - 5809641..5810042 (-) 402 WP_083375726.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58454.31 Da        Isoelectric Point: 6.9037

>NTDB_id=880547 RHP74_RS26700 WP_311096688.1 5805420..5807009(+) (pilS) [Pseudomonas sp. SG20052]
MVAETSTPGGKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLAFAQDDLLRSGSWLYLVLNILLVVFWQNTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVAALGIVGLGFLLSFSHPISPGEYLQVGTLG
ALCFAAALLVQGLIRRLEVSENLAEQRASEVLGLEALNALILHRMRTGILVLDDQRRVRLANQSALTLLGQNDLDGLLID
DYSPALVERLQLWFNNPSLRPQSLKIASSGIELQPSFIALDQSPNHHTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGATDR
QLIHLHIGPGDFKTLMDPNQLTQILDNLLRNAWRHSALNHDLAQAWLELFVEPDSQLPTLEVRDNGPGVAPDQQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=880547 RHP74_RS26700 WP_311096688.1 5805420..5807009(+) (pilS) [Pseudomonas sp. SG20052]
GTGGTCGCTGAGACGTCCACTCCCGGCGGCAAACAGGCACAGCGACTGCTGCGTCTTTACCATCTCTACCGTTTAAGCGT
CGGCATCACCCTCGTACTGTTGATTTCCAGCAACATGGACAACCAGCTGCTGGCCTTCGCCCAGGATGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTCTTTTGGCAGAACACCCGACGGCCGGCACAGCTTTTC
AGCCTTGCATTGGTCGATGTCCTGCTGCTGTGCGGTCTGTTCTATGCCGCGGGCGGTGTGGCCAGCGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCAGCAACACCTTGTTGCGCGGGCGTATCGGCTTGTTGATCGCGGCGGTCGCCGCCCTTG
GCATCGTCGGCCTTGGCTTCCTCCTGAGTTTCAGTCACCCGATCAGTCCCGGCGAGTACCTGCAAGTCGGCACTCTCGGC
GCGCTGTGTTTTGCCGCGGCGTTGCTCGTGCAAGGTCTGATCAGGCGACTGGAAGTCAGCGAAAACCTCGCCGAACAGCG
AGCCAGTGAAGTGCTTGGCCTGGAAGCGCTCAATGCGCTGATCCTGCACCGCATGCGCACGGGTATTCTGGTGCTGGACG
ACCAGCGGCGGGTGCGACTGGCCAATCAAAGCGCCTTGACCTTACTGGGGCAGAACGACCTCGATGGTCTGTTGATCGAC
GACTATTCGCCGGCCTTGGTCGAACGCCTTCAGCTGTGGTTCAACAATCCATCGCTGCGACCGCAAAGCCTGAAAATCGC
CAGCAGTGGCATAGAACTGCAACCCAGCTTCATTGCGTTGGACCAAAGCCCGAACCACCACACCCTGGTATTTCTGGAGG
ACCTCGCCCAGATCGCTCAACAAGCGCAGCAACTGAAGCTCGCCGCACTCGGGCGCCTGACGGCGGGTATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCGTTAGTCATGCCGCGCAGCTATTGCAGGAATCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTACCGCAACGGCTCGATTTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGTGAAGGCGCGACCGATCGC
CAGTTGATTCACCTGCACATCGGTCCGGGCGACTTCAAAACCCTGATGGACCCGAATCAGCTGACTCAGATTCTCGACAA
TCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTGAATCACGACCTGGCGCAGGCCTGGCTCGAGTTGTTTGTCGAGCCCG
ACAGCCAGTTGCCGACGCTCGAAGTCCGGGACAACGGCCCCGGCGTGGCGCCGGACCAACAAACGCATTTGTTCGAACCG
TTCTTCACCACCAGTAGCCAGGGCACAGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

PAS domain (PAS_8)

(201-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605