Detailed information NTG0880534

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: RHP74_RS08005
• Genome accession: NZ_CP134498
• Coordinates: 1765179..1767413 (+)
• Length: 744 a.a.
• NCBI ID: WP_311098748.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SG20052
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1760179..1772413

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHP74_RS07980 (RHP74_07980)	-	1761215..1761874 (+)	660	WP_169858229.1	transglutaminase family protein	-
RHP74_RS07985 (RHP74_07985)	-	1761918..1762541 (+)	624	WP_083374758.1	glutathione S-transferase family protein	-
RHP74_RS07990 (RHP74_07990)	-	1762675..1763607 (+)	933	WP_010461902.1	ABC transporter ATP-binding protein	-
RHP74_RS07995 (RHP74_07995)	-	1763604..1764383 (+)	780	WP_311098746.1	ABC transporter permease	-
RHP74_RS08000 (RHP74_08000)	-	1764525..1765043 (-)	519	WP_010461897.1	DUF2062 domain-containing protein	-
RHP74_RS08005 (RHP74_08005)	comA	1765179..1767413 (+)	2235	WP_311098748.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
RHP74_RS08010 (RHP74_08010)	exbB	1767512..1768147 (+)	636	WP_010461893.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
RHP74_RS08015 (RHP74_08015)	-	1768144..1768575 (+)	432	WP_010461891.1	biopolymer transporter ExbD	-
RHP74_RS08020 (RHP74_08020)	lpxK	1768575..1769585 (+)	1011	WP_010461890.1	tetraacyldisaccharide 4'-kinase	-
RHP74_RS08025 (RHP74_08025)	-	1769611..1769796 (+)	186	WP_010461887.1	Trm112 family protein	-
RHP74_RS08030 (RHP74_08030)	kdsB	1769793..1770557 (+)	765	WP_282410788.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RHP74_RS08035 (RHP74_08035)	-	1770557..1771021 (+)	465	WP_010461884.1	low molecular weight protein-tyrosine-phosphatase	-
RHP74_RS08040 (RHP74_08040)	murB	1771018..1772037 (+)	1020	WP_311098752.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81567.89 Da
• Isoelectric Point: 10.2828

>NTDB_id=880534 RHP74_RS08005 WP_311098748.1 1765179..1767413(+) (comA) [Pseudomonas sp. SG20052]
MRTGMMALALGLLALRFLPVLPPVWLWMLLPVVGLMLLPFRTHPLAFFLFGFSWACASAQWALDDRLSLKLDGETRWVEG
RVTGLPQNAEGVVRFELTDSQSRSTRLPRHLRLAWYDGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGHRLAAAQWAWRDSIRQQLQAVDAQGRTGALIALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPSRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALNGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLILGLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLVDLLFKGLALMAGRFPAWVPVAVPVWIWALGTLGAFLLLLPKGVPLRSLGWPLLLLLV
FPPRPMLAEGVAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGEFDLGERVVLPSLRKLGVSGIDLMLLSHADADHAGGA
RAIANGLPVARVLSGDPEALPAELRAEGCESGRQWTWDGVDFRLWQWTSAADSNQKSCVLQIEANGERLLLTGDIDAAAE
RALLDSPLAVPTDWLQSPHHGSRSSSSMALLAALQPRAVLISRGQGNSFGHPHPTVMARYQKRGMAIYDSATHGAIRLQL
GRFKPPWTMRLDRRFWRDPPPLGP

Nucleotide

• Length: 2235 bp

>NTDB_id=880534 RHP74_RS08005 WP_311098748.1 1765179..1767413(+) (comA) [Pseudomonas sp. SG20052]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTTTGCTGGCCCTGCGTTTTTTACCGGTTTTACCGCCGGTCTGGTTATG
GATGTTGCTGCCGGTCGTGGGTTTGATGCTGTTGCCGTTTCGGACTCATCCGTTGGCGTTTTTTCTGTTCGGCTTCAGTT
GGGCGTGCGCGAGTGCGCAGTGGGCGCTGGATGATCGCCTGTCGCTGAAGCTTGATGGCGAGACTCGTTGGGTCGAAGGT
CGGGTGACGGGCCTGCCGCAGAATGCCGAAGGGGTGGTGCGCTTCGAGTTGACCGACAGTCAGTCCCGAAGCACCCGGCT
GCCCCGGCATCTGCGTCTCGCCTGGTATGACGGACCGCCCGTCAACAGCGGCGAACGGTGGCGGCTGGCGGTCAAGTTGA
AGCGTCCTGCCGGGCTGCTCAATCCGCATGCCTTTGACTACGACGCCTGGTTGCTGGCACAACGCATCGGCGCTACCGGT
ACGGTCAAGGATGGCCATAGGCTGGCCGCCGCCCAATGGGCCTGGCGTGACAGCATTCGGCAGCAATTGCAGGCCGTCGA
TGCCCAAGGCCGGACGGGGGCGCTGATCGCATTGGTGTTGGGCGACGGCGGCGGGCTGAGTCGCGAGGACTGGCAAGTGC
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGGTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGTCTGTGGCCGAGCCGTTTGCCCTGGCTGCCATGGGCCTGCGGACTGGCGTTTGCCGC
TGCGCTGGGTTACGGGTTGCTGGCCGGTTTTGAGGTGCCGGTGCGCCGGGCCTGCTTGATGATCGGTCTGGTGTTGTTGT
GGCGGCTAAGGTTTCGGCACCTTGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCAATGGCGTTTTACTGCTCGACCCGCTG
GCGAGCCTGCAACCGGGGTTCTGGTTGTCCTTCGCAGCGGTGGCGGTGTTGATCTTCACTTTCGGTGGGCGTCTGGGGCC
GTGGCGTTGGTGGCAAACGTGGACCCGTGCGCAATGGCTGATCGCGATCGGACTGTGCCCATTGCTATTGATACTTGGCT
TGCCGATCAGCGTCAGCGGACCAGTGGCCAATTTGCTGGCGGTGCCCTGGGTCAGTCTGGTGGTATTGCCGCCAGCCTTG
CTCGGGACGTTGTTACTGCCCGTCCCTTATGTGGGCGAGGGGTTGCTGTGGCTGGCGGGCGGTCTGGTCGACCTGTTGTT
CAAGGGGCTGGCCTTGATGGCCGGGCGATTCCCCGCCTGGGTGCCGGTCGCGGTGCCGGTGTGGATTTGGGCGCTCGGTA
CGCTGGGGGCCTTTCTTCTATTACTGCCTAAAGGGGTGCCGTTGCGCTCGTTGGGTTGGCCGCTGCTGCTGTTGCTGGTT
TTTCCACCTCGCCCGATGCTTGCCGAAGGCGTCGCCGAAGTCTGGCAACTGGACGTCGGCCAGGGCCTGGCCATCCTGGT
GCGCACCCGCCATCACACCTTGTTGTATGACGCCGGGCCGCGTTTTGGCGAATTCGACCTCGGCGAGCGAGTGGTGCTGC
CGTCATTGCGCAAACTGGGCGTGTCCGGGATCGACCTGATGCTGCTCAGTCACGCCGACGCCGATCACGCCGGCGGTGCA
CGTGCGATTGCCAACGGATTGCCGGTGGCGCGGGTCCTGAGCGGTGATCCCGAGGCGCTGCCAGCCGAATTGCGCGCCGA
AGGCTGTGAAAGCGGCCGGCAATGGACCTGGGACGGTGTGGACTTCCGTCTCTGGCAATGGACATCCGCCGCCGACAGCA
ATCAAAAATCCTGTGTCTTGCAGATCGAAGCCAATGGCGAGCGATTGCTGCTGACCGGTGATATTGATGCGGCAGCCGAG
CGGGCATTGCTCGACAGTCCGCTTGCCGTGCCGACCGATTGGCTGCAATCGCCTCACCACGGCAGTCGCAGTTCCTCTTC
GATGGCGCTGCTCGCCGCGTTGCAACCCAGGGCTGTGCTGATTTCCCGGGGCCAGGGCAATTCCTTTGGCCACCCGCATC
CCACCGTCATGGCGCGCTATCAAAAACGAGGCATGGCGATCTACGACAGCGCCACCCACGGCGCCATTCGTCTGCAACTG
GGACGGTTCAAGCCGCCATGGACGATGCGTCTGGATCGGCGTTTCTGGCGCGATCCGCCACCGTTGGGCCCATAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-680)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.966	96.237	0.616
comA	Ralstonia pseudosolanacearum GMI1000	33.537	100	0.37