Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RHP74_RS08010 Genome accession   NZ_CP134498
Coordinates   1767512..1768147 (+) Length   211 a.a.
NCBI ID   WP_010461893.1    Uniprot ID   A0A024E8F0
Organism   Pseudomonas sp. SG20052     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1762512..1773147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP74_RS07990 (RHP74_07990) - 1762675..1763607 (+) 933 WP_010461902.1 ABC transporter ATP-binding protein -
  RHP74_RS07995 (RHP74_07995) - 1763604..1764383 (+) 780 WP_311098746.1 ABC transporter permease -
  RHP74_RS08000 (RHP74_08000) - 1764525..1765043 (-) 519 WP_010461897.1 DUF2062 domain-containing protein -
  RHP74_RS08005 (RHP74_08005) comA 1765179..1767413 (+) 2235 WP_311098748.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHP74_RS08010 (RHP74_08010) exbB 1767512..1768147 (+) 636 WP_010461893.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHP74_RS08015 (RHP74_08015) - 1768144..1768575 (+) 432 WP_010461891.1 biopolymer transporter ExbD -
  RHP74_RS08020 (RHP74_08020) lpxK 1768575..1769585 (+) 1011 WP_010461890.1 tetraacyldisaccharide 4'-kinase -
  RHP74_RS08025 (RHP74_08025) - 1769611..1769796 (+) 186 WP_010461887.1 Trm112 family protein -
  RHP74_RS08030 (RHP74_08030) kdsB 1769793..1770557 (+) 765 WP_282410788.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHP74_RS08035 (RHP74_08035) - 1770557..1771021 (+) 465 WP_010461884.1 low molecular weight protein-tyrosine-phosphatase -
  RHP74_RS08040 (RHP74_08040) murB 1771018..1772037 (+) 1020 WP_311098752.1 UDP-N-acetylmuramate dehydrogenase -
  RHP74_RS08045 (RHP74_08045) - 1772283..1772753 (+) 471 WP_311098754.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22883.09 Da        Isoelectric Point: 6.8770

>NTDB_id=880535 RHP74_RS08010 WP_010461893.1 1767512..1768147(+) (exbB) [Pseudomonas sp. SG20052]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=880535 RHP74_RS08010 WP_010461893.1 1767512..1768147(+) (exbB) [Pseudomonas sp. SG20052]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCTGAGCATTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCACCGTTGGGCGAGATCCTGGCAGCGGGCCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCACGGGTGGTTCATGAACTCGAACGCTATAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCATTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACCAATGCCGCAGTGCTGGCGGGCGGTATCTCCAAGGCGCTGATCACTACGGCC
GCTGGCCTGATGGTCGGTATCCCGGCAGTATTCTTTCACCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTTCAGGGCGACCGTGATGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024E8F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863