Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RHP70_RS17215 Genome accession   NZ_CP134496
Coordinates   3333983..3334672 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. SG20001     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3328983..3339672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP70_RS17180 (RHP70_17180) - 3329062..3329544 (-) 483 WP_034623751.1 flagellar protein FlgN -
  RHP70_RS17185 (RHP70_17185) flgM 3329563..3329826 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  RHP70_RS17190 (RHP70_17190) - 3329906..3330325 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  RHP70_RS17195 (RHP70_17195) comFC 3330382..3331038 (-) 657 WP_231506847.1 ComF family protein Machinery gene
  RHP70_RS17200 (RHP70_17200) - 3331065..3331358 (-) 294 WP_024426256.1 late competence development ComFB family protein -
  RHP70_RS17205 (RHP70_17205) comFA 3331407..3332804 (-) 1398 WP_311165396.1 DEAD/DEAH box helicase Machinery gene
  RHP70_RS17210 (RHP70_17210) - 3332925..3333767 (-) 843 WP_024423625.1 DegV family protein -
  RHP70_RS17215 (RHP70_17215) degU 3333983..3334672 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  RHP70_RS17220 (RHP70_17220) degS 3334737..3335912 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  RHP70_RS17225 (RHP70_17225) - 3336134..3336802 (+) 669 WP_012011434.1 YigZ family protein -
  RHP70_RS17230 (RHP70_17230) - 3336787..3337878 (+) 1092 WP_024423626.1 LCP family protein -
  RHP70_RS17235 (RHP70_17235) - 3337914..3338981 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=880515 RHP70_RS17215 WP_008348273.1 3333983..3334672(-) (degU) [Bacillus sp. SG20001]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=880515 RHP70_RS17215 WP_008348273.1 3333983..3334672(-) (degU) [Bacillus sp. SG20001]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACCAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996