Detailed information NTG0880514

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: RHP70_RS17205
• Genome accession: NZ_CP134496
• Coordinates: 3331407..3332804 (-)
• Length: 465 a.a.
• NCBI ID: WP_311165396.1
• Uniprot ID: -
• Organism: Bacillus sp. SG20001
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3326407..3337804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHP70_RS17170 (RHP70_17170)	flgL	3326608..3327516 (-)	909	WP_024423617.1	flagellar hook-associated protein FlgL	-
RHP70_RS17175 (RHP70_17175)	flgK	3327526..3329046 (-)	1521	WP_024423618.1	flagellar hook-associated protein FlgK	-
RHP70_RS17180 (RHP70_17180)	-	3329062..3329544 (-)	483	WP_034623751.1	flagellar protein FlgN	-
RHP70_RS17185 (RHP70_17185)	flgM	3329563..3329826 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
RHP70_RS17190 (RHP70_17190)	-	3329906..3330325 (-)	420	WP_024423621.1	TIGR03826 family flagellar region protein	-
RHP70_RS17195 (RHP70_17195)	comFC	3330382..3331038 (-)	657	WP_231506847.1	ComF family protein	Machinery gene
RHP70_RS17200 (RHP70_17200)	-	3331065..3331358 (-)	294	WP_024426256.1	late competence development ComFB family protein	-
RHP70_RS17205 (RHP70_17205)	comFA	3331407..3332804 (-)	1398	WP_311165396.1	DEAD/DEAH box helicase	Machinery gene
RHP70_RS17210 (RHP70_17210)	-	3332925..3333767 (-)	843	WP_024423625.1	DegV family protein	-
RHP70_RS17215 (RHP70_17215)	degU	3333983..3334672 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
RHP70_RS17220 (RHP70_17220)	degS	3334737..3335912 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
RHP70_RS17225 (RHP70_17225)	-	3336134..3336802 (+)	669	WP_012011434.1	YigZ family protein	-

Sequence

Protein

• Length: 465 a.a.
• Molecular weight: 53220.17 Da
• Isoelectric Point: 9.9672

>NTDB_id=880514 RHP70_RS17205 WP_311165396.1 3331407..3332804(-) (comFA) [Bacillus sp. SG20001]
MNMDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETCQAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSPQRFQITPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNRGVRIYLSATPSRKMTREVSRGKLEAIKIPLRFHEQPLPIPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIATMKKVTKILREQSLNVEGVSADDPNRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKRCGFN

Nucleotide

• Length: 1398 bp

>NTDB_id=880514 RHP70_RS17205 WP_311165396.1 3331407..3332804(-) (comFA) [Bacillus sp. SG20001]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACTGTTGAAACAAAGTGTCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAGGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATG
CCAAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTAGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGGTGACAATTACCGTACTTTATGGAGGCAGTCCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAGAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAGAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACCATTACCCATAC
CGACCTTTCATTGGATCGGTCATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTGAACGTGGAGGGGGTATCTGCCGATGATCCGAATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTCCAGATATCTGGACGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACGGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (324-420)

• Type III restriction enzyme, res subunit (ResIII) (116-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.974	98.065	0.51
comFA/cflA	Streptococcus pneumoniae Rx1	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae D39	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae R6	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae TIGR4	38.269	94.409	0.361