Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RJW51_RS09515 Genome accession   NZ_CP134491
Coordinates   1871229..1872230 (+) Length   333 a.a.
NCBI ID   WP_024391249.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1866229..1877230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS09500 (RJW51_09485) - 1867448..1868305 (-) 858 WP_172089403.1 DUF975 family protein -
  RJW51_RS09505 (RJW51_09490) tgt 1868573..1869715 (+) 1143 WP_024391247.1 tRNA guanosine(34) transglycosylase Tgt -
  RJW51_RS09510 (RJW51_09495) - 1869938..1871023 (-) 1086 WP_172089402.1 M24 family metallopeptidase -
  RJW51_RS09515 (RJW51_09500) ccpA 1871229..1872230 (+) 1002 WP_024391249.1 catabolite control protein A Regulator
  RJW51_RS09520 (RJW51_09505) - 1872346..1873389 (+) 1044 WP_172065986.1 glycosyltransferase -
  RJW51_RS09525 (RJW51_09510) - 1873410..1874723 (+) 1314 WP_024396668.1 glycosyltransferase family 4 protein -
  RJW51_RS09530 (RJW51_09515) - 1874738..1875112 (+) 375 WP_172089401.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36707.68 Da        Isoelectric Point: 5.5299

>NTDB_id=880397 RJW51_RS09515 WP_024391249.1 1871229..1872230(+) (ccpA) [Streptococcus parasuis strain 1628469]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDESDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASSDAVKLLAKNNKKIAFVSGPLVDDVNGKVRFSGYKEGLQANGLEFNEGLVFESKYKYEEGYALAERVLNAG
ATAAYVAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=880397 RJW51_RS09515 WP_024391249.1 1871229..1872230(+) (ccpA) [Streptococcus parasuis strain 1628469]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAGGAAAATACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCCAACGCCTATTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAGTGACGA
GAAAGAAATTAATGTTGTTAATACATTGTTTTCTAAACAAGTTGATGGGATCATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCAGAATTTTCACGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAGCTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATTGCCTTTGTTTC
AGGTCCATTGGTTGATGACGTCAATGGGAAAGTTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAATGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGCCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATGTTGCTGAAGATGAAATCGCTGCCGGTTTGTTAAATGGTATTAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATCGGTGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

100

0.796
  ccpA Streptococcus pneumoniae D39

78.979

100

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.399

0.586