Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJW51_RS08465 Genome accession   NZ_CP134491
Coordinates   1664864..1665358 (+) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus parasuis strain 1628469     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1666126..1666590 1664864..1665358 flank 768


Gene organization within MGE regions


Location: 1664864..1666590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS08465 (RJW51_08450) ssbA 1664864..1665358 (+) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  RJW51_RS08470 (RJW51_08455) rpsR 1665391..1665630 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  RJW51_RS08475 (RJW51_08460) tnpA 1666126..1666590 (+) 465 WP_172090264.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=880392 RJW51_RS08465 WP_002942409.1 1664864..1665358(+) (ssbA) [Streptococcus parasuis strain 1628469]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=880392 RJW51_RS08465 WP_002942409.1 1664864..1665358(+) (ssbA) [Streptococcus parasuis strain 1628469]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAATGTAGTCATTT
GGCGTCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AGCTATGATAACCAACAGGGACAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTTTTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGTGGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGCAATCCAATGGATATATCAGACGAT
GACCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366