Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   RJW51_RS08150 Genome accession   NZ_CP134491
Coordinates   1603502..1604794 (+) Length   430 a.a.
NCBI ID   WP_172076101.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1598502..1609794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS08125 (RJW51_08110) - 1599014..1599655 (+) 642 WP_024391837.1 response regulator transcription factor -
  RJW51_RS08130 (RJW51_08115) - 1599707..1601107 (+) 1401 WP_172089967.1 Cof-type HAD-IIB family hydrolase -
  RJW51_RS08135 (RJW51_08120) - 1601109..1601474 (+) 366 WP_024391839.1 S1 RNA-binding domain-containing protein -
  RJW51_RS08140 (RJW51_08125) cysK 1601796..1602722 (-) 927 WP_172076105.1 cysteine synthase A -
  RJW51_RS08145 (RJW51_08130) - 1602813..1603445 (-) 633 WP_172055547.1 YigZ family protein -
  RJW51_RS08150 (RJW51_08135) comFA/cflA 1603502..1604794 (+) 1293 WP_172076101.1 helicase-related protein Machinery gene
  RJW51_RS08155 (RJW51_08140) - 1604787..1605452 (+) 666 WP_172076099.1 ComF family protein -
  RJW51_RS08160 (RJW51_08145) hpf 1605529..1606068 (+) 540 WP_024391844.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 48578.05 Da        Isoelectric Point: 8.5172

>NTDB_id=880391 RJW51_RS08150 WP_172076101.1 1603502..1604794(+) (comFA/cflA) [Streptococcus parasuis strain 1628469]
MNELENYHGRLFTKYQLTSEEREKAKTIASVVGKNSCFRCGTTFEEENKLPNAAYYCRACLLLGRVRTDEKLYYFPQKDF
SMNACLLWKGVLTDWQQRISDGLIANVEKRQATLVHAVTGAGKTEMMYHAVASVINKGGAVCLASPRIDVCIELYKRLQN
DFSVPISLLHGESDPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPILYRAADNAVKVDGVLVFLTATSTDEL
DKKVKSGKLQKLSLPRRFHGNPLVVPQKVWFSKFDTYLKKNKLVPKLRNAIQKQRETGYPLLIFVPEISKGLEFASIMEQ
IFPEETIGFVSSQTDNRLEIVEGFRNKEITILISTTILERGVTFPGVDVIVVQANHYLYTSSSLVQISGRVGRSMDRPTG
LLLFFHEGSTQSIEKAIAEIKQMNKEAGYV

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=880391 RJW51_RS08150 WP_172076101.1 1603502..1604794(+) (comFA/cflA) [Streptococcus parasuis strain 1628469]
ATGAATGAACTAGAGAATTACCATGGAAGACTTTTTACTAAATACCAATTAACGTCAGAAGAAAGAGAAAAAGCAAAAAC
AATTGCCAGTGTAGTAGGAAAGAATTCTTGTTTCCGATGCGGTACAACGTTTGAGGAAGAAAACAAGCTGCCAAATGCTG
CGTATTATTGTCGGGCTTGTCTCCTTTTGGGGAGAGTTCGAACAGATGAGAAACTCTACTATTTTCCACAGAAAGATTTT
TCAATGAATGCTTGTCTTCTATGGAAGGGGGTGCTGACCGACTGGCAACAACGAATATCAGATGGATTAATTGCGAATGT
GGAAAAACGACAAGCAACGCTTGTTCATGCTGTAACAGGTGCGGGCAAAACGGAAATGATGTACCATGCGGTTGCATCAG
TAATTAATAAGGGAGGTGCTGTATGTCTAGCCAGTCCAAGAATTGATGTTTGCATTGAACTCTACAAGCGACTACAAAAT
GATTTTTCGGTCCCAATTAGTCTGCTACATGGGGAATCAGACCCATATTTCAGAACACCACTCGTTGTTGCGACCACTCA
TCAGTTGTTAAAGTTCTACCAGGCATTTGATTTGGTCTTGATCGATGAAGTAGATGCTTTCCCCTATGCAGACAACCCTA
TATTATATCGAGCAGCAGATAATGCAGTTAAAGTAGATGGTGTTTTAGTATTTTTAACAGCAACCTCTACGGATGAATTA
GATAAAAAAGTCAAATCAGGCAAATTGCAAAAACTCAGTCTCCCTAGACGTTTTCATGGAAATCCGCTTGTGGTTCCGCA
AAAGGTCTGGTTTTCCAAATTCGATACATATTTGAAGAAAAATAAATTAGTTCCAAAACTCAGAAATGCCATTCAAAAGC
AAAGAGAAACAGGCTATCCATTACTTATTTTTGTACCAGAAATTTCGAAAGGATTGGAATTTGCAAGTATAATGGAACAA
ATCTTTCCAGAAGAAACAATTGGTTTTGTATCGAGTCAGACAGACAATAGGCTTGAAATAGTGGAAGGATTTCGCAACAA
AGAAATTACAATTTTAATTTCTACTACAATCTTAGAGCGAGGTGTAACATTCCCAGGAGTAGATGTCATTGTCGTTCAAG
CCAATCACTACTTATACACCTCATCTAGTCTTGTGCAAATTTCAGGTCGCGTCGGAAGAAGTATGGACCGCCCGACGGGC
TTGCTTCTGTTTTTTCATGAAGGAAGTACGCAATCAATTGAAAAGGCAATTGCAGAAATCAAACAAATGAATAAGGAGGC
AGGTTATGTCTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(92-165)

Helicase conserved C-terminal domain (Helicase_C)

(288-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

65.728

99.07

0.651
  comFA/cflA Streptococcus pneumoniae Rx1

65.728

99.07

0.651
  comFA/cflA Streptococcus pneumoniae D39

65.728

99.07

0.651
  comFA/cflA Streptococcus pneumoniae R6

65.728

99.07

0.651
  comFA/cflA Streptococcus pneumoniae TIGR4

65.728

99.07

0.651
  comFA/cflA Streptococcus mitis SK321

65.493

99.07

0.649
  comFA Lactococcus lactis subsp. cremoris KW2

51.759

92.558

0.479
  comFA Latilactobacillus sakei subsp. sakei 23K

36.597

99.767

0.365
  comFA Bacillus subtilis subsp. subtilis str. 168

38.329

94.651

0.363