Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AABD45_RS12365 Genome accession   NZ_CP150831
Coordinates   2670891..2672972 (+) Length   693 a.a.
NCBI ID   WP_130251922.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2665891..2677972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS12345 (AABD45_12885) gmk 2666844..2667467 (+) 624 WP_011078918.1 guanylate kinase -
  AABD45_RS12350 (AABD45_12890) rpoZ 2667595..2667867 (+) 273 WP_017420484.1 DNA-directed RNA polymerase subunit omega -
  AABD45_RS12355 (AABD45_12895) spoT 2667902..2670022 (+) 2121 WP_038964522.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  AABD45_RS12360 (AABD45_12900) trmH 2670110..2670796 (+) 687 WP_038941674.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  AABD45_RS12365 (AABD45_12905) recG 2670891..2672972 (+) 2082 WP_130251922.1 ATP-dependent DNA helicase RecG Machinery gene
  AABD45_RS12370 (AABD45_12910) - 2673226..2674632 (+) 1407 WP_406849020.1 uracil-xanthine permease family protein -
  AABD45_RS12375 (AABD45_12915) envZ 2674708..2676006 (-) 1299 WP_039561898.1 two-component system sensor histidine kinase EnvZ -
  AABD45_RS12380 (AABD45_12920) ompR 2676099..2676818 (-) 720 WP_011078925.1 two-component system response regulator OmpR -
  AABD45_RS12385 (AABD45_12925) greB 2677020..2677502 (-) 483 WP_011078926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76823.98 Da        Isoelectric Point: 8.0324

>NTDB_id=880360 AABD45_RS12365 WP_130251922.1 2670891..2672972(+) (recG) [Vibrio vulnificus strain Per1]
MSAQLLSAVPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEMNLELFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKTKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIKRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=880360 AABD45_RS12365 WP_130251922.1 2670891..2672972(+) (recG) [Vibrio vulnificus strain Per1]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACGTCCCTCAGCGGGGTCGGTGCTAAGGTGGCTGAAAAGCTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGATCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGTACCCGCATCTACCCGATAG
CCAAATTGCATGCTGGATTGTGGGCCGCTGTGCAGGGTAATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTAACGGTAAAACTCAGCGACGGGAATGGCACCATCACGCTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGCAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATGAATCTGGAACTGTTCG
ATGAAGGAAAGCACCCAGCCCAAATCCGCTTAATTATGGAAGAGTTGTTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGTTGCCACTGCCCCCTGTCCATCAGCTTAAACAACAGCTGTTAGCCCAGCTGCCTTT
TTCACCGACCAATGCACAAGCGCGGGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGTTCGGGCAAAACCTTAGTGGCGGCATTGGCGGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTGCTGGCCGAGCAGCACGCGATCAACTTCGCTAATTGGTTTGAAAAAATGGGCATCCC
CGTTGGCTGGCTAGCAGGCAAGCTCAAAGGCAAGACCAAAGAAGCCGAGTTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTTGGGACGCATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCGCTTGTGATCATTGATGAACAACAT
CGCTTTGGTGTACATCAACGCTTGGAGCTGCGTGAAAAAGGCGCCAAACAAGGTGCTTACCCACACCAACTGATCATGAC
CGCCACTCCGATCCCTCGCACATTGGCCATGACCGCCTATGCCGATTTGGAAACGTCAGTAATCGACGAGTTACCGCCGG
GGCGAACCCCGATCCAAACCGTCGCGATTCCCGATACCAAACGCGAGGACATTGTCGAGCGCATTCGTCATGCCTGCCTC
AATGAGGGCAAGCAGGCGTATTGGGTCTGTACCTTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCCGACAC
TGCCGAAGAGCTGCAACGTAAATTGCCTGATGTGCGCATTGGTTTGGTGCATGGCCGAATGAAACCGGCTGAAAAACAAG
CGGTAATGCAAGCGTTCAAAAACAATGAATTACATCTTTTGGTCGCCACCACAGTGATCGAAGTCGGTGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCTGAGCGCTTGGGTCTCGCACAATTGCATCAGTTGCGCGGTCGCGTCGGTCG
AGGCTCAGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACAGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCCCAGCGCGATCTTGAAATCCGCGGGCCGGGTGAGCTGCTCGGCACCAAACAA
ACCGGATTGGCGGATTTCAAAATTGCCGATCTCGTCCGCGATCAGCGCCTGATCCCCGAAGTTCAGCGCGCTGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTAAACGCTGGTTGGGCGAACGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.958

96.97

0.475
  recG/mmsA Streptococcus pneumoniae R6

40.089

96.825

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.089

96.825

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.714

96.537

0.374