Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AABD45_RS08230 Genome accession   NZ_CP150831
Coordinates   1779208..1781238 (-) Length   676 a.a.
NCBI ID   WP_406848894.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1774208..1786238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS08205 (AABD45_08745) moaB 1774281..1774793 (-) 513 WP_406848892.1 molybdenum cofactor biosynthesis protein B -
  AABD45_RS08210 (AABD45_08750) moaA 1774872..1775861 (-) 990 WP_017428875.1 GTP 3',8-cyclase MoaA -
  AABD45_RS08215 (AABD45_08755) - 1776176..1777066 (+) 891 WP_406848893.1 YvcK family protein -
  AABD45_RS08220 (AABD45_08760) luxU 1777153..1777500 (-) 348 WP_017428873.1 quorum-sensing phosphorelay protein LuxU -
  AABD45_RS08225 (AABD45_08765) luxO 1777500..1778900 (-) 1401 WP_017428872.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AABD45_RS08230 (AABD45_08770) uvrB 1779208..1781238 (-) 2031 WP_406848894.1 excinuclease ABC subunit UvrB Machinery gene
  AABD45_RS08240 (AABD45_08780) rsxA 1782120..1782698 (+) 579 WP_017428869.1 electron transport complex subunit RsxA -
  AABD45_RS08245 (AABD45_08785) rsxB 1782700..1783296 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -
  AABD45_RS08250 (AABD45_08790) rsxC 1783309..1785834 (+) 2526 WP_406848895.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77100.92 Da        Isoelectric Point: 5.0918

>NTDB_id=880342 AABD45_RS08230 WP_406848894.1 1779208..1781238(-) (uvrB) [Vibrio vulnificus strain Per1]
MSKLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLH
IRRGDVMDQRDILRRLAELQYSRNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLP
RFTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADSITK
SMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKVSKTVPLSKVAEPSLPYNVLTPQQLEKEIT
KLEAQMYKHAQNLEFELAAQKRDEIEKLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=880342 AABD45_RS08230 WP_406848894.1 1779208..1781238(-) (uvrB) [Vibrio vulnificus strain Per1]
ATGAGCAAACTTTACGATCTGGTTTCTGACTATGCGCCATCGGGAGATCAACCAACGGCGATCAAACAACTGACAGAAGG
GTTGGATGCTGGTTTGGCTCACCAAACCTTACTCGGAGTGACGGGATCCGGTAAAACATTTACCTTGGCGAATGTGATTG
CTCAAGCGCAACGTCCTGCAATTCTACTTGCGCCAAACAAAACCCTTGCCGCCCAACTTTACGGTGAGATGAAAGCGTTT
TTCCCAAATAACGCGGTCGAATATTTTGTCTCTTACTACGATTATTACCAACCTGAAGCCTATGTGCCAACCACTGACAC
TTTTATAGAGAAGGACTCATCGGTCAACGCACATATCGAGCAAATGCGTTTATCTGCCACCAAAGCGTTATTGGAGCGAA
AAGACGCCATTATCGTCGCCTCTGTTTCGGCTATTTATGGTTTGGGTGATCCCGAAGCCTACCTGCAAATGATGCTGCAT
ATACGCCGTGGTGATGTGATGGATCAACGCGACATACTGCGCCGTTTGGCTGAGTTGCAATACAGTCGTAACGATATTGC
TTTTGAGCGAGGCCAATTTCGCGTGCGCGGAGAGGTCATCGACGTTTTTCCGGCTGAGTCGGACCAAGATGCGGTACGCA
TCGAGATGTTTGATGATGAGATCGACTGCATCAGTGTGTTTGACCCACTGACCGGAGTGGTCAAACAACGCGATTTACCC
CGCTTCACCATTTACCCTAAGACTCACTACGTCACGCCACGAGAGCGTATTCTGCAGGCGATTGAAAACATCAAGCAAGA
GCTGCGTGAGCGACAAACTTACTTGCGTGACAATAATAAATTGTTGGAAGAGCAACGTATTAGTCAACGTACCCAGTTCG
ACATTGAAATGATGAATGAGCTGGGATTCTGCTCTGGCATTGAAAACTACTCGCGTTACCTCAGTGGTCGAGCGGAAGGT
GAGCCGCCTCCAACATTATTTGACTACTTACCACACGATGGTTTGTTGATCATCGATGAATCTCACGTGACCGTGCCACA
AATTGGCGCAATGTATAAAGGTGACCGCTCGCGGAAAGAGACCTTGGTTGAATATGGTTTCCGTTTGCCTTCAGCATTGG
ACAATCGACCATTGAAATTTGAAGAGTTCGAAGCTCTTGCGCCACAAACTATTTTCGTTTCAGCCACCCCGGGCAATTAC
GAGCTAGAGAAAAGTGCGGGCGAAATTGCTGACCAAGTGGTGCGTCCGACTGGTCTGCTCGATCCTGTACTGGAAGTGCG
ACCAGTGGCGACTCAAGTGGATGATCTACTTTCTGAGATCCGCATTCGCGCAGTGAAAGATGAACGGGTGTTAGTGACAA
CACTGACCAAACGTATGGCGGAAGACCTAACTGAATACTTGCACGAGCACGATGTGAAAGTGCGTTACTTACACTCTGAT
ATCGACACGGTTGAACGAGTGGAGATCATTCGTGACTTGAGGCTAGGGGAGTTCGATGTGTTGGTGGGGATTAACTTGTT
ACGCGAGGGTCTCGACATGCCTGAAGTGTCTTTGGTTGCGATTCTCGATGCCGACAAAGAAGGCTTTTTACGTTCAGAGC
GCTCATTGATTCAGACCATTGGCCGTGCAGCCCGTAACCTCCATGGTAAAGCGATCTTGTATGCAGATTCCATCACCAAA
TCGATGAAGAAAGCGATGGATGAAACGGAACGACGCCGTGAGAAACAGCAAGCGTACAATGAAAAAATGGGCATTCAGCC
TCAAGCGTTGAAGCGTAATATCAAAGATATTATGGAGCTGGGCGATATTACTAAATCCCGCAAGCAGAAAGTGAGCAAAA
CGGTGCCATTGTCGAAAGTGGCTGAACCATCGCTGCCCTATAATGTGTTGACACCACAGCAATTGGAAAAAGAAATCACA
AAACTGGAAGCGCAAATGTACAAACACGCTCAGAATTTGGAATTTGAGTTGGCCGCGCAGAAGCGTGATGAAATTGAAAA
GTTGCGTCAGCAGTTTATCGCTAACAGCTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

Type III restriction enzyme, res subunit (ResIII)

(16-138)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

56.601

97.485

0.552
  uvrB Streptococcus pneumoniae TIGR4

56.601

97.485

0.552
  uvrB Streptococcus pneumoniae D39

56.601

97.485

0.552