Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJW49_RS08570 Genome accession   NZ_CP134477
Coordinates   1684204..1684698 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain NLS40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1679204..1689698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS08555 (RJW49_08555) - 1681978..1682922 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  RJW49_RS08560 (RJW49_08560) - 1682938..1683594 (+) 657 WP_311048030.1 DUF1129 domain-containing protein -
  RJW49_RS08565 (RJW49_08565) rpsR 1683932..1684171 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  RJW49_RS08570 (RJW49_08570) ssbA 1684204..1684698 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  RJW49_RS08575 (RJW49_08575) rpsF 1684710..1685000 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  RJW49_RS08580 (RJW49_08580) - 1685172..1686161 (-) 990 WP_014736331.1 lipoate--protein ligase -
  RJW49_RS08585 (RJW49_08585) - 1686358..1687497 (+) 1140 WP_014736333.1 DUF6688 family protein -
  RJW49_RS08590 (RJW49_08590) lpdA 1687537..1689297 (-) 1761 WP_024388972.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=880229 RJW49_RS08570 WP_002942409.1 1684204..1684698(-) (ssbA) [Streptococcus suis strain NLS40]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=880229 RJW49_RS08570 WP_002942409.1 1684204..1684698(-) (ssbA) [Streptococcus suis strain NLS40]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTACAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366