Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RJW55_RS03585 Genome accession   NZ_CP134473
Coordinates   746809..747612 (+) Length   267 a.a.
NCBI ID   WP_043027113.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 741809..752612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS03560 (RJW55_03560) - 742238..742936 (-) 699 WP_024391257.1 amino acid ABC transporter permease -
  RJW55_RS03565 (RJW55_03565) - 742951..743790 (-) 840 WP_043027112.1 transporter substrate-binding domain-containing protein -
  RJW55_RS03570 (RJW55_03570) - 743801..744562 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  RJW55_RS03575 (RJW55_03575) micA 744756..745460 (+) 705 WP_004298854.1 response regulator YycF Regulator
  RJW55_RS03580 (RJW55_03580) micB 745453..746802 (+) 1350 WP_024379730.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJW55_RS03585 (RJW55_03585) vicX 746809..747612 (+) 804 WP_043027113.1 MBL fold metallo-hydrolase Regulator
  RJW55_RS03590 (RJW55_03590) - 748140..748781 (+) 642 WP_228475326.1 ATP-binding cassette domain-containing protein -
  RJW55_RS03595 (RJW55_03595) - 748944..749678 (+) 735 WP_043027114.1 ATP-binding cassette domain-containing protein -
  RJW55_RS03600 (RJW55_03600) pbp2b 749770..751845 (+) 2076 WP_172045781.1 penicillin-binding protein PBP2B -
  RJW55_RS03605 (RJW55_03605) recR 751854..752450 (+) 597 WP_012027296.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29542.65 Da        Isoelectric Point: 6.1679

>NTDB_id=880162 RJW55_RS03585 WP_043027113.1 746809..747612(+) (vicX) [Streptococcus suis strain TMW_SS028]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIV
ANADAYLIESNHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=880162 RJW55_RS03585 WP_043027113.1 746809..747612(+) (vicX) [Streptococcus suis strain TMW_SS028]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGATCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTCTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGTGTCAGTCATGATGCGGCTTGTCCTCAATTTT
ATCGTTTTATGAAGGATGATAAGTCCTTTGTCATGTTAACGGATACTGGCTATGTCAGTGATCGAATGGCTGGGATTGTG
GCGAATGCAGATGCCTATTTGATTGAGTCTAATCATGATGTTGAAATCTTGCGTGCGGGTTCTTATTCTTGGAACCTCAA
GCAACGGATTTTGTCTGATAAGGGGCACCTTTGTAATGAGGATGGTGCTGATGCCATGATTCGATCACTAGGAAATCGGA
CTAAAAAGATTTACCTAGGGCATTTATCAAAGGAAAACAATATCAAGGAATTGGCCCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.03

100

0.76