Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJW56_RS09100 Genome accession   NZ_CP134472
Coordinates   1826769..1827263 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain 1522228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1821769..1832263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS09085 (RJW56_09085) - 1824646..1825590 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  RJW56_RS09090 (RJW56_09090) - 1825606..1826262 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  RJW56_RS09095 (RJW56_09095) rpsR 1826497..1826736 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  RJW56_RS09100 (RJW56_09100) ssbA 1826769..1827263 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  RJW56_RS09105 (RJW56_09105) rpsF 1827275..1827565 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  RJW56_RS09110 (RJW56_09110) - 1827737..1828726 (-) 990 WP_014736331.1 lipoate--protein ligase -
  RJW56_RS09115 (RJW56_09115) - 1828810..1830246 (-) 1437 WP_024394954.1 6-phospho-beta-glucosidase -
  RJW56_RS09120 (RJW56_09120) - 1830243..1830860 (-) 618 Protein_1762 histidine phosphatase family protein -
  RJW56_RS09125 (RJW56_09125) - 1830872..1831474 (-) 603 WP_024394953.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=880125 RJW56_RS09100 WP_002942409.1 1826769..1827263(-) (ssbA) [Streptococcus suis strain 1522228]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=880125 RJW56_RS09100 WP_002942409.1 1826769..1827263(-) (ssbA) [Streptococcus suis strain 1522228]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGATAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAGAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366