Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RIU93_RS07540 Genome accession   NZ_CP134464
Coordinates   1524571..1525200 (-) Length   209 a.a.
NCBI ID   WP_058710065.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 2023.05     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519571..1530200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU93_RS07510 (RIU93_07510) - 1520099..1520629 (-) 531 WP_002452295.1 acyl-CoA thioesterase -
  RIU93_RS07515 (RIU93_07515) - 1520688..1521929 (-) 1242 WP_058710066.1 aminopeptidase -
  RIU93_RS07520 (RIU93_07520) - 1521942..1522145 (-) 204 WP_002466135.1 DUF1128 domain-containing protein -
  RIU93_RS07525 (RIU93_07525) - 1522292..1522756 (+) 465 WP_002466141.1 low molecular weight protein-tyrosine-phosphatase -
  RIU93_RS07530 (RIU93_07530) - 1522763..1523047 (+) 285 WP_002466132.1 YtxH domain-containing protein -
  RIU93_RS07535 (RIU93_07535) - 1523277..1524512 (+) 1236 WP_015364859.1 YihY/virulence factor BrkB family protein -
  RIU93_RS07540 (RIU93_07540) vraR 1524571..1525200 (-) 630 WP_058710065.1 response regulator transcription factor Regulator
  RIU93_RS07545 (RIU93_07545) vraS 1525190..1526233 (-) 1044 WP_002466111.1 sensor histidine kinase Regulator
  RIU93_RS07550 (RIU93_07550) liaF 1526230..1526931 (-) 702 WP_015364858.1 cell wall-active antibiotics response protein LiaF -
  RIU93_RS07555 (RIU93_07555) - 1526946..1527332 (-) 387 WP_002466133.1 DUF2543 family protein -
  RIU93_RS07560 (RIU93_07560) map 1527476..1528231 (-) 756 WP_002466104.1 type I methionyl aminopeptidase -
  RIU93_RS07565 (RIU93_07565) - 1528398..1529384 (+) 987 WP_015364857.1 aromatic acid exporter family protein -
  RIU93_RS07570 (RIU93_07570) - 1529452..1530177 (-) 726 WP_023373124.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23575.23 Da        Isoelectric Point: 5.0164

>NTDB_id=880070 RIU93_RS07540 WP_058710065.1 1524571..1525200(-) (vraR) [Staphylococcus warneri strain 2023.05]
MAIKVLFVDDHEMVRIGISSYLSTQSDIKVVGEGESGKDAIAKAHELQPDLILMDLLMEDMDGVEATTEIKKDLPHIKVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKTYNGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=880070 RIU93_RS07540 WP_058710065.1 1524571..1525200(-) (vraR) [Staphylococcus warneri strain 2023.05]
ATGGCGATTAAAGTATTATTTGTAGACGACCATGAGATGGTTAGAATAGGTATATCAAGTTACTTATCAACACAATCTGA
CATTAAAGTAGTGGGAGAAGGAGAGTCTGGGAAAGATGCAATTGCAAAGGCACACGAGTTACAACCAGATTTAATTCTAA
TGGACTTACTGATGGAGGATATGGATGGTGTAGAAGCGACAACAGAAATAAAAAAGGATTTACCTCACATCAAAGTAGTA
ATGCTTACAAGTTTCATTGAAGATAAAGAAGTATATCGAGCTTTAGATGCTGGTGTAGATAGTTATATTTTAAAGACTAC
AAGTGCTAGTGATATCGCAGAAGCGGTTCGTAAAACATACAATGGTGAATCGGTGTTTGAACCAGAAGTATTAGTTAAAA
TGCGTAACAGAATGAAAAAACGCGCTGAGCTATATGAAATGTTAACAGAAAGAGAAATGGAAATTTTATTGTTAATTGCT
AAAGGTTACTCCAATCAAGAGATTGCTAGTGCATCTCACATTACAATAAAAACAGTTAAAACACATGTAAGTAATATTCT
AAGTAAATTAGAAGTTCAAGATAGAACACAAGCAGTCATTTATGCTTTCCAACATAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.258

100

0.943
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.364