Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | RIU93_RS04525 | Genome accession | NZ_CP134464 |
| Coordinates | 893749..894624 (+) | Length | 291 a.a. |
| NCBI ID | WP_375338525.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain 2023.05 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 867031..941062 | 893749..894624 | within | 0 |
Gene organization within MGE regions
Location: 867031..941062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RIU93_RS04420 (RIU93_04420) | recG | 867889..869937 (+) | 2049 | WP_058709420.1 | ATP-dependent DNA helicase RecG | - |
| RIU93_RS04425 (RIU93_04425) | fapR | 870087..870656 (+) | 570 | WP_058709419.1 | transcription factor FapR | - |
| RIU93_RS04430 (RIU93_04430) | plsX | 870649..871635 (+) | 987 | WP_015365088.1 | phosphate acyltransferase PlsX | - |
| RIU93_RS04435 (RIU93_04435) | fabD | 871628..872548 (+) | 921 | WP_119547432.1 | ACP S-malonyltransferase | - |
| RIU93_RS04440 (RIU93_04440) | fabG | 872548..873282 (+) | 735 | WP_119547434.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| RIU93_RS04445 (RIU93_04445) | - | 873591..873824 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| RIU93_RS04450 (RIU93_04450) | rnc | 873935..874663 (+) | 729 | WP_015365085.1 | ribonuclease III | - |
| RIU93_RS04455 (RIU93_04455) | smc | 874816..878385 (+) | 3570 | WP_015365084.1 | chromosome segregation protein SMC | - |
| RIU93_RS04460 (RIU93_04460) | ftsY | 878382..879626 (+) | 1245 | WP_058709416.1 | signal recognition particle-docking protein FtsY | - |
| RIU93_RS04465 (RIU93_04465) | - | 879613..879945 (+) | 333 | WP_002466066.1 | putative DNA-binding protein | - |
| RIU93_RS04470 (RIU93_04470) | ffh | 879970..881337 (+) | 1368 | WP_002450574.1 | signal recognition particle protein | - |
| RIU93_RS04475 (RIU93_04475) | rpsP | 881869..882144 (+) | 276 | WP_023375169.1 | 30S ribosomal protein S16 | - |
| RIU93_RS04480 (RIU93_04480) | rimM | 882312..882815 (+) | 504 | WP_058709415.1 | ribosome maturation factor RimM | - |
| RIU93_RS04485 (RIU93_04485) | trmD | 882815..883552 (+) | 738 | WP_002466037.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| RIU93_RS04490 (RIU93_04490) | rplS | 883658..884008 (+) | 351 | WP_002450570.1 | 50S ribosomal protein L19 | - |
| RIU93_RS04495 (RIU93_04495) | - | 884174..886783 (-) | 2610 | WP_058709414.1 | YfhO family protein | - |
| RIU93_RS04500 (RIU93_04500) | - | 886776..889376 (-) | 2601 | Protein_873 | YfhO family protein | - |
| RIU93_RS04505 (RIU93_04505) | ylqF | 889676..890551 (+) | 876 | WP_311095385.1 | ribosome biogenesis GTPase YlqF | - |
| RIU93_RS04510 (RIU93_04510) | - | 890544..891314 (+) | 771 | WP_058709438.1 | ribonuclease HII | - |
| RIU93_RS04515 (RIU93_04515) | sucC | 891422..892588 (+) | 1167 | WP_002466034.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| RIU93_RS04520 (RIU93_04520) | sucD | 892610..893515 (+) | 906 | WP_002466045.1 | succinate--CoA ligase subunit alpha | - |
| RIU93_RS04525 (RIU93_04525) | dprA | 893749..894624 (+) | 876 | WP_375338525.1 | DNA-processing protein DprA | Machinery gene |
| RIU93_RS04530 (RIU93_04530) | topA | 894802..896877 (+) | 2076 | WP_213463601.1 | type I DNA topoisomerase | - |
| RIU93_RS04535 (RIU93_04535) | trmFO | 896994..898301 (+) | 1308 | WP_002466058.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| RIU93_RS04540 (RIU93_04540) | xerC | 898466..899359 (+) | 894 | WP_058709410.1 | tyrosine recombinase XerC | - |
| RIU93_RS04545 (RIU93_04545) | hslV | 899356..899901 (+) | 546 | WP_002450559.1 | ATP-dependent protease subunit HslV | - |
| RIU93_RS04550 (RIU93_04550) | hslU | 899990..901393 (+) | 1404 | WP_015365077.1 | ATP-dependent protease ATPase subunit HslU | - |
| RIU93_RS04555 (RIU93_04555) | codY | 901417..902190 (+) | 774 | WP_002450557.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| RIU93_RS04560 (RIU93_04560) | rpsB | 902497..903285 (+) | 789 | WP_002466032.1 | 30S ribosomal protein S2 | - |
| RIU93_RS04565 (RIU93_04565) | tsf | 903437..904315 (+) | 879 | WP_058709409.1 | translation elongation factor Ts | - |
| RIU93_RS04570 (RIU93_04570) | pyrH | 904456..905178 (+) | 723 | WP_002450554.1 | UMP kinase | - |
| RIU93_RS04575 (RIU93_04575) | frr | 905194..905748 (+) | 555 | WP_002450553.1 | ribosome recycling factor | - |
| RIU93_RS04580 (RIU93_04580) | - | 905981..906751 (+) | 771 | WP_002466060.1 | isoprenyl transferase | - |
| RIU93_RS04585 (RIU93_04585) | - | 906755..907537 (+) | 783 | WP_002466065.1 | phosphatidate cytidylyltransferase | - |
| RIU93_RS04590 (RIU93_04590) | rseP | 907780..909066 (+) | 1287 | WP_002466035.1 | RIP metalloprotease RseP | - |
| RIU93_RS04595 (RIU93_04595) | - | 909086..910789 (+) | 1704 | WP_058709406.1 | proline--tRNA ligase | - |
| RIU93_RS04600 (RIU93_04600) | - | 911057..915367 (+) | 4311 | WP_107529198.1 | PolC-type DNA polymerase III | - |
| RIU93_RS04605 (RIU93_04605) | rimP | 915549..916016 (+) | 468 | WP_058709404.1 | ribosome maturation factor RimP | - |
| RIU93_RS04610 (RIU93_04610) | nusA | 916037..917269 (+) | 1233 | WP_015365073.1 | transcription termination factor NusA | - |
| RIU93_RS04615 (RIU93_04615) | rnpM | 917289..917576 (+) | 288 | WP_002450545.1 | RNase P modulator RnpM | - |
| RIU93_RS04620 (RIU93_04620) | - | 917573..917890 (+) | 318 | WP_058709403.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| RIU93_RS04625 (RIU93_04625) | infB | 917895..920060 (+) | 2166 | WP_058709402.1 | translation initiation factor IF-2 | - |
| RIU93_RS04630 (RIU93_04630) | rbfA | 920200..920550 (+) | 351 | WP_002466047.1 | 30S ribosome-binding factor RbfA | - |
| RIU93_RS04635 (RIU93_04635) | truB | 920703..921620 (+) | 918 | WP_107529193.1 | tRNA pseudouridine(55) synthase TruB | - |
| RIU93_RS04640 (RIU93_04640) | ribF | 921633..922604 (+) | 972 | WP_058709400.1 | riboflavin biosynthesis protein RibF | - |
| RIU93_RS04645 (RIU93_04645) | rpsO | 922718..922987 (+) | 270 | WP_002450539.1 | 30S ribosomal protein S15 | - |
| RIU93_RS04650 (RIU93_04650) | pnp | 923123..925222 (+) | 2100 | WP_311095386.1 | polyribonucleotide nucleotidyltransferase | - |
| RIU93_RS04655 (RIU93_04655) | rnjB | 925409..927082 (+) | 1674 | WP_015365069.1 | ribonuclease J2 | - |
| RIU93_RS13270 | - | 927318..928151 (+) | 834 | Protein_905 | cell division protein FtsK | - |
| RIU93_RS13275 | - | 928263..929714 (+) | 1452 | Protein_906 | DNA translocase FtsK | - |
| RIU93_RS04665 (RIU93_04665) | - | 929717..930430 (+) | 714 | WP_058709396.1 | GntR family transcriptional regulator | - |
| RIU93_RS04670 (RIU93_04670) | yfmF | 930443..931729 (+) | 1287 | WP_375338526.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| RIU93_RS04675 (RIU93_04675) | yfmH | 931729..933018 (+) | 1290 | WP_015365066.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| RIU93_RS04680 (RIU93_04680) | ymfI | 933015..933719 (+) | 705 | WP_002465810.1 | elongation factor P 5-aminopentanone reductase | - |
| RIU93_RS04685 (RIU93_04685) | - | 933854..934690 (+) | 837 | WP_311095388.1 | YmfK family protein | - |
| RIU93_RS04690 (RIU93_04690) | - | 934711..935103 (+) | 393 | WP_002465806.1 | RodZ family helix-turn-helix domain-containing protein | - |
| RIU93_RS04695 (RIU93_04695) | pgsA | 935134..935709 (+) | 576 | WP_015365063.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| RIU93_RS04700 (RIU93_04700) | - | 935882..937033 (+) | 1152 | WP_058709395.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| RIU93_RS04705 (RIU93_04705) | recA | 937200..938246 (+) | 1047 | WP_002451246.1 | recombinase RecA | Machinery gene |
| RIU93_RS04710 (RIU93_04710) | rny | 938685..940244 (+) | 1560 | WP_015365062.1 | ribonuclease Y | - |
| RIU93_RS04715 (RIU93_04715) | - | 940366..940581 (-) | 216 | WP_002467042.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 291 a.a. Molecular weight: 33912.04 Da Isoelectric Point: 8.7971
>NTDB_id=880055 RIU93_RS04525 WP_375338525.1 893749..894624(+) (dprA) [Staphylococcus warneri strain 2023.05]
MNLNEHFLLKLYWSHFTTSQIHQFYRYHPHIFQMTSNEQETSLLCWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDENYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN
MNLNEHFLLKLYWSHFTTSQIHQFYRYHPHIFQMTSNEQETSLLCWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDENYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN
Nucleotide
Download Length: 876 bp
>NTDB_id=880055 RIU93_RS04525 WP_375338525.1 893749..894624(+) (dprA) [Staphylococcus warneri strain 2023.05]
ATGAATTTGAACGAACACTTTTTACTTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CCACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAACTTCATTATTATGTTGGATTACTCAACATCATCCTACGC
TTCTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAAATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA
ATGAATTTGAACGAACACTTTTTACTTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CCACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAACTTCATTATTATGTTGGATTACTCAACATCATCCTACGC
TTCTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAAATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
55.986 |
97.595 |
0.546 |
| dprA | Staphylococcus aureus N315 |
55.986 |
97.595 |
0.546 |