Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OCX48_RS04590 Genome accession   NZ_AP024736
Coordinates   959853..960839 (+) Length   328 a.a.
NCBI ID   WP_000959293.1    Uniprot ID   A0A641A950
Organism   Staphylococcus aureus strain 59709     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 954853..965839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX48_RS04565 opp4B 955066..956028 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  OCX48_RS04570 opp4C 956040..956921 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  OCX48_RS04575 trpS 956963..957952 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  OCX48_RS04580 spxA 958247..958642 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  OCX48_RS04585 mecA 959013..959732 (+) 720 WP_001217728.1 adaptor protein MecA -
  OCX48_RS04590 coiA 959853..960839 (+) 987 WP_000959293.1 competence protein CoiA Machinery gene
  OCX48_RS04595 pepF 960887..962695 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  OCX48_RS04600 yjbH 963155..963961 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  OCX48_RS04605 - 963984..964349 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  OCX48_RS04610 - 964453..965046 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  OCX48_RS04615 - 965232..965579 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38898.54 Da        Isoelectric Point: 9.7732

>NTDB_id=87983 OCX48_RS04590 WP_000959293.1 959853..960839(+) (coiA) [Staphylococcus aureus strain 59709]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=87983 OCX48_RS04590 WP_000959293.1 959853..960839(+) (coiA) [Staphylococcus aureus strain 59709]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A950

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

100

100

1
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment